Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,221,367 – 1,221,463 |
Length | 96 |
Max. P | 0.513381 |
Location | 1,221,367 – 1,221,463 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.60 |
Mean single sequence MFE | -19.43 |
Consensus MFE | -14.22 |
Energy contribution | -13.97 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.22 |
Mean z-score | -1.43 |
Structure conservation index | 0.73 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1221367 96 - 20766785 --GACCACAUAGUGACGAACAGCACCCAGAGGGUGUGCGAAGGUUAAAACUAUAACAAAAAAAAAAAAACAUGAAAAAAUUAUGGUC-GUGAUCGUCCG --.........(.(((((.(.((((((...))))))((((..((((......)))).............(((((.....))))).))-))).)))))). ( -21.60) >DroSec_CAF1 24594 84 - 1 --GUCCACAUAGUGACGAACAGCACCCACAGGGCGUGCGGAGGCUAAAACUAUA------------AAACACGAAAAAAUGAUGAUC-GUGAUCGUCCG --.........(.(((((...((((((....)).))))................------------...(((((...........))-))).)))))). ( -19.40) >DroSim_CAF1 11291 84 - 1 --GUCCACAUAGUGACGAACAGCACCCAGAGGGCGUGCGAAGGCUAAAACUAUA------------AAACACGAAAAAAUGAUGAUC-GUGAUCGUCCG --.........(.(((((...((((((....)).))))................------------...(((((...........))-))).)))))). ( -19.40) >DroEre_CAF1 38108 87 - 1 GUUUCGACGUAGUGAAGAAGAGCACCAAAAAAGUGUGCGAAGGGUACUACUAUA------------AUACACGAAAAAACUAGGAUCUGUGAUCCAACG (((.....((((((.......(((((......).))))......))))))....------------................(((((...)))))))). ( -17.32) >consensus __GUCCACAUAGUGACGAACAGCACCCAGAGGGCGUGCGAAGGCUAAAACUAUA____________AAACACGAAAAAAUGAUGAUC_GUGAUCGUCCG ........(((((........((((((....)).))))..........)))))...........................(((((((...))))))).. (-14.22 = -13.97 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:56 2006