Locus 3099

Sequence ID 2R_DroMel_CAF1
Location 10,595,297 – 10,595,396
Length 99
Max. P 0.514699
window5116

overview

Window 6

Location 10,595,297 – 10,595,396
Length 99
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 93.71
Mean single sequence MFE -28.16
Consensus MFE -25.80
Energy contribution -25.52
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.08
Structure conservation index 0.92
SVM decision value -0.04
SVM RNA-class probability 0.514699
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10595297 99 - 20766785
--GUCUUGGUUUUGGUCUCGCUACCAAGAAGCCU-GGCAGCACCUCAUUGCGUGCUAAAUGGUUUCACGCCGCAAAAUUGCACCCAGGCAUAGACAGACUCU
--((((...(((((((......))))))).((((-((.((((((.....).)))))....(((.....)))(((....)))..))))))..))))....... ( -31.30)
>DroSec_CAF1 44310 99 - 1
--GUCUUGGUUUUGGUCUCGCUCCCAAGAAGCCU-GGCAGCACCUCAUUGCGUGCUAAAUGGUUUCACGCCGCAAAAUUGCACCCAGGCAUAGACAGACUCA
--((((...((((((........)))))).((((-((.((((((.....).)))))....(((.....)))(((....)))..))))))..))))....... ( -29.90)
>DroEre_CAF1 43544 101 - 1
UGGUCUUGGUUUUGGUCUCGCUCCCAAGAAGCCU-GGCAGCACCUCAUUGCGUGCUAAAUGGUUUCACGCCGCAAAAUUGCACCCAGACAUAGACAGACUCU
..((((..((((.(((...........(((((((-(((((((......))).)))))...)))))).....(((....)))))).))))..))))....... ( -27.50)
>DroYak_CAF1 50995 99 - 1
--GUCUUGGUUUUGGUCUCGCUCCCAAGGAGCCU-GGCAGCACCUCAUUGCGUGCUAAAUGGUUUCACGCCGCAAAAUUGCACCCAGACAUAGACAGAUUCU
--((((..((((.(((...(((((...)))))..-(((((((((.....).)))))....(......))))(((....)))))).))))..))))....... ( -29.30)
>DroAna_CAF1 78700 98 - 1
--GUCUUGGUUUUGGUUUCGCUCUCAAG--GCUUAGGCAGCACCUCAUUGCGUGCUAAAUGGUUUCACGCCGCAAAAUUGCACCCAGGCAUAUACAAAUUCU
--((((.((((((((........)))))--))).)))).(((......)))(((((....(((.....)))(((....))).....)))))........... ( -22.80)
>consensus
__GUCUUGGUUUUGGUCUCGCUCCCAAGAAGCCU_GGCAGCACCUCAUUGCGUGCUAAAUGGUUUCACGCCGCAAAAUUGCACCCAGGCAUAGACAGACUCU
..((((.(((.((((........))))((((((..(((((((......))).))))....)))))).....(((....)))))).))))............. (-25.80 = -25.52 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:31 2006