Locus 3097

Sequence ID 2R_DroMel_CAF1
Location 10,592,703 – 10,592,794
Length 91
Max. P 0.516858
window5113

overview

Window 3

Location 10,592,703 – 10,592,794
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.14
Mean single sequence MFE -24.73
Consensus MFE -12.79
Energy contribution -12.74
Covariance contribution -0.05
Combinations/Pair 1.28
Mean z-score -2.46
Structure conservation index 0.52
SVM decision value -0.03
SVM RNA-class probability 0.516858
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10592703 91 + 20766785
UAAUUUUAAGUGGCGAAAUAAACUAGCAUUAAGUGCUGUCCGCUGCCAUUUCGAAUGCCAUCUGA---------GCAUAGUG----CUAUUAUGCUUUAUUGGC
..((((.((((((((......((.(((((...)))))))....)))))))).))))((((...((---------(((((((.----..)))))))))...)))) ( -27.50)
>DroSec_CAF1 41727 88 + 1
UCAUUUUAAGUGGCGAAAUAAACUAGCAUUAAGUGCUGUCCGCUGCCAUUUCGAAUGCCAUCUAA---------GCAUAGUG----CU---AUGCUUUAUUGGC
..((((.((((((((......((.(((((...)))))))....)))))))).))))((((...((---------(((((...----.)---))))))...)))) ( -26.90)
>DroSim_CAF1 41002 88 + 1
UCAUUUUAAGUGGCGAAAUAAACUAGCAUUAAGUGCUGUCCGCUGCCAUUUCGAAUGCCAUCUAA---------GCAUAGUG----CU---AUGCUUUAUUGGC
..((((.((((((((......((.(((((...)))))))....)))))))).))))((((...((---------(((((...----.)---))))))...)))) ( -26.90)
>DroYak_CAF1 48384 88 + 1
UCAUUUUAAGUGGCGGAAUAAACUAGCAUUAAGUGCUGUCCGCUGCCAUUUCGAAUGCCAUCUAA---------GCAUAGUG----CU---ACGCUUUAUUGGC
..((((.(((((((((.....((.(((((...)))))))...))))))))).))))((((...((---------((.((...----.)---).))))...)))) ( -26.70)
>DroAna_CAF1 75320 92 + 1
UUGUUUUAAGUGGCGAAAUAAACUCGCAUUAAUUGCUGUUCGCUGCCAUUUCGAAUGGCAUUUAA---------ACACCGAGUAUCCG---UAGCUUAAUGGGC
.....((((((.(((......(((((..((((.(((((((((.........))))))))).))))---------....)))))...))---).))))))..... ( -22.40)
>DroPer_CAF1 71683 95 + 1
UAGUUUUAAGUGGCAAAAUAAACUCGUAUUAAUUGCUGUUUGCUGCCAUUUGAAAUGCCAUUUAAAUUAUCUCCUCCCAUUG----C-----UGCUUUAUUGAC
..(((((((((((((...(((((..(((.....))).))))).)))))))))))))..........................----.-----............ ( -18.00)
>consensus
UCAUUUUAAGUGGCGAAAUAAACUAGCAUUAAGUGCUGUCCGCUGCCAUUUCGAAUGCCAUCUAA_________GCAUAGUG____CU___AUGCUUUAUUGGC
.(((((.((((((((........(((((.....))))).....)))))))).)))))............................................... (-12.79 = -12.74 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:28 2006