Locus 3096

Sequence ID 2R_DroMel_CAF1
Location 10,592,437 – 10,592,529
Length 92
Max. P 0.613024
window5112

overview

Window 2

Location 10,592,437 – 10,592,529
Length 92
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -21.90
Consensus MFE -10.54
Energy contribution -10.60
Covariance contribution 0.06
Combinations/Pair 1.15
Mean z-score -2.22
Structure conservation index 0.48
SVM decision value 0.16
SVM RNA-class probability 0.613024
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10592437 92 - 20766785
ACUAAAUAUGAGAAUA-UGUUAGAGAGU-UGCAGGCGAC-AAACAUUUUUGUGCAGUUAUGCAAAA-----AUGUUUGUAGUUAAUUGCGCAUAAUUUAU
.((((((((....)))-).))))...((-.((((((.((-((((((((((((........))))))-----)))))))).))...))))))......... ( -22.40)
>DroPse_CAF1 70459 99 - 1
GCUAAAUAUGAGAUAA-UUUUUGAAAAUACGUCGGCGACGAAAUAGUUUUGCGCAUGUAUGCAGAAUGUGCAUUUUUGUAGUUAAUUGCGCAUUAUUUAU
..........((((((-(....((((.((..(((....)))..)).))))(((((....(((((((.......)))))))......)))))))))))).. ( -20.60)
>DroSec_CAF1 41469 92 - 1
ACUAAAUAUUAGAAUA-UAUUAGAGAGU-UGCAGGCGAC-AAACAUUUUUGUGCAGUUAUGCAAAA-----AUGUUUGUAGUUAAUUGCGCAUAAUUUAU
.((((((((....)))-).))))...((-.((((((.((-((((((((((((........))))))-----)))))))).))...))))))......... ( -21.30)
>DroYak_CAF1 48137 92 - 1
ACUAAAUAUGAGAAUA-UGUUUGCGAGU-UGCAGGCGAC-AAACAUUUUUGUGCAGUUAUGCAAAA-----AUGUUUGUAGUUAAUUGCGCAUAAUUUAU
......((((.(....-(((((((....-.)))))))((-((((((((((((........))))))-----)))))))).........).))))...... ( -23.90)
>DroAna_CAF1 75029 80 - 1
-------------AGAUUUUUGGUGAGU-UGCAGGCGAC-AAACAUUUUUGUGCAGCUAUGCAAAA-----AUGUUUGUAGUUAAUUGCGCAUAAUUUAU
-------------.........((((((-((...((.((-((((((((((((........))))))-----)))))))).((.....)))).)))))))) ( -21.00)
>DroPer_CAF1 71460 99 - 1
GCUAAAUAUGAGAUAA-UUUUUGAAAAUACGUCGGCGACGAAAUAUUUUUGCGCAUGUAUGCAGAAUGUGAAUUGUUGUAGUUAAUUGCGCAUUAUUUAU
..........((((((-(....(((((((..(((....)))..)))))))(((((....((((((((....))).)))))......)))))))))))).. ( -22.20)
>consensus
ACUAAAUAUGAGAAUA_UUUUUGAGAGU_UGCAGGCGAC_AAACAUUUUUGUGCAGUUAUGCAAAA_____AUGUUUGUAGUUAAUUGCGCAUAAUUUAU
.................................................(((((((...((((((.........)))))).....)))))))........ (-10.54 = -10.60 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:27 2006