Locus 3094

Sequence ID 2R_DroMel_CAF1
Location 10,591,210 – 10,591,313
Length 103
Max. P 0.678416
window5109

overview

Window 9

Location 10,591,210 – 10,591,313
Length 103
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.64
Mean single sequence MFE -30.88
Consensus MFE -20.36
Energy contribution -21.87
Covariance contribution 1.51
Combinations/Pair 1.30
Mean z-score -1.81
Structure conservation index 0.66
SVM decision value 0.30
SVM RNA-class probability 0.678416
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10591210 103 + 20766785
AUUUUUUCGCAGUGUACAUAUGUGGUGGCCGUUGGCCAUGCACUGCGAGCAUUUGGUCUAUUGUUGUCAUUGCUGCCCAUUGCUAAUAUUGGUAGCUGUCGGU-
.....((((((((((.((....))((((((...))))))))))))))))..............(((.((..((((((.((.......)).)))))))).))).- ( -32.00)
>DroPse_CAF1 69385 97 + 1
-----GUCU--CUGUGUGUUUGUUCUGACAGUUGGCAGAGCUCGGUGAACAUUUGGCCCAUUGUUGUCACUGGCGCUCAUUGCUAAUAUUGGUAGCUCUCCGCU
-----....--..(((.(...((((..(..(((((((((((((((((((((..........)))..))))))).))))..))))))).)..).)))...)))). ( -26.20)
>DroSec_CAF1 40227 103 + 1
AUUUUUUCGCAGUGCACAUAUGUGGUGGCCAUUGGCCAUGCACUGCGAGCAUUUGGUCUAUUGUUGUCAUUGCUGCCCAUUGCUAAUAUUGGUAGCUGUCGGU-
.....((((((((((((....)).((((((...))))))))))))))))..............(((.((..((((((.((.......)).)))))))).))).- ( -34.20)
>DroSim_CAF1 39479 103 + 1
ACUUUUUCGCAGUGCACAUAUGUGGUGGCCAUUGGCCAUGCACUGCGAGCAUUUGGUCUAUUGUUGUCAUUGCUGCCCAUUGCUAAUAUUGGUAGCUGUCGGU-
.....((((((((((((....)).((((((...))))))))))))))))..............(((.((..((((((.((.......)).)))))))).))).- ( -34.20)
>DroEre_CAF1 39579 87 + 1
---UUUUCGCAGUGUAC-------------GUUGGCCGUGCACUGCGAACAUUUGGUCUAUUGUUGUCAUUGCUGCCCAUUGCUAAUAUUGGUGGCUGUCGGU-
---..((((((((((((-------------(.....)))))))))))))..............(((.((..((..((.((.......)).))..)))).))).- ( -29.00)
>DroYak_CAF1 47010 103 + 1
AUUUUUUUGCAGUGUGCGUAUGUGGUGGCCGUUGGCCAUGCACUGCGAACAUUUGGUCUAUUGUUGUCAUUGCUGCCCAUUGCUAAUAUUGGUAGCUGUCGGU-
.....((((((((((((....)).((((((...))))))))))))))))..............(((.((..((((((.((.......)).)))))))).))).- ( -29.70)
>consensus
AUUUUUUCGCAGUGUACAUAUGUGGUGGCCGUUGGCCAUGCACUGCGAACAUUUGGUCUAUUGUUGUCAUUGCUGCCCAUUGCUAAUAUUGGUAGCUGUCGGU_
.....(((((((((((.........((((.....)))))))))))))))......................((((((.((.......)).))))))........ (-20.36 = -21.87 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:24 2006