Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,584,817 – 10,584,916 |
Length | 99 |
Max. P | 0.973586 |
Location | 10,584,817 – 10,584,916 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.85 |
Mean single sequence MFE | -30.62 |
Consensus MFE | -25.47 |
Energy contribution | -26.72 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.07 |
Mean z-score | -3.19 |
Structure conservation index | 0.83 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10584817 99 + 20766785 CGAAAUGAUUUCAUUUCUUUUAUUUAUGA--------UGCUCGGUUCAGUGGGGCUUUGCCAUCAGCUUCCCUUUGGCUGGCUGCAUUAAGCCUUCACUGAGGUUUC .((((((....))))))............--------.......((((((((((((((((..((((((.......))))))..)))..))))).))))))))..... ( -32.90) >DroSec_CAF1 33840 99 + 1 CGAAAUGAUUUCAUUUCUUUUAUUUAUGA--------UGCUCGGUUCAGUGGGGCUUCGCCAUCAGCUUCCCUUUGGCUGGCUGCAUUAAGCCUUCACUGAGGUUUC .((((((....))))))............--------.......(((((((((((((.((..((((((.......))))))..))...))))).))))))))..... ( -31.20) >DroSim_CAF1 33168 99 + 1 CGAAAUGAUUUCAUUUCUUUUAUUUAUGA--------UGCUCGGUUCAGUGGGGCUUCGCCAUCAGCUUCCCUUUGGCUGGCUGCAUUAAGCCUUCACUGAGGUUUC .((((((....))))))............--------.......(((((((((((((.((..((((((.......))))))..))...))))).))))))))..... ( -31.20) >DroEre_CAF1 33278 99 + 1 CGAAAUGAUUUCAUUUCUUUUAUUUAUGA--------UGCUCGGUUCAGUGGGGCUUCGCCUUCGGCUUUCCUUUGGCUGGCUGCAUUAAGCCUUCACUGAGGUUUC .((((((....))))))............--------.......(((((((((((((.((..((((((.......))))))..))...))))).))))))))..... ( -30.50) >DroYak_CAF1 40348 99 + 1 CGAAAUGAUUUCAUUUCUUUUAUUUAUGA--------UGCUCGGUUCAGUGGGGCUUUGCCUUCAGCUUCCUUUUGGCUGGAUGCAUUAAGCCUUCACUGAGGUUUC .((((((....))))))............--------.......((((((((((((((((.(((((((.......))))))).)))..))))).))))))))..... ( -34.90) >DroAna_CAF1 67176 99 + 1 CGAAAUGAUUUCAUUUCUUUUAUUUAUGACGCCAAACUGCUCCGUUCGGU------UCGCCUUUUGGUA-GCUGAGGCU-GCAGCAUUAAGCCUUCACUGAGAUUUC .((((((....)))))).............((((((..((.((....)).------..))..))))))(-(..((((((-.........))))))..))........ ( -23.00) >consensus CGAAAUGAUUUCAUUUCUUUUAUUUAUGA________UGCUCGGUUCAGUGGGGCUUCGCCAUCAGCUUCCCUUUGGCUGGCUGCAUUAAGCCUUCACUGAGGUUUC .((((((....))))))...........................(((((((((((((.((..((((((.......))))))..))...))))).))))))))..... (-25.47 = -26.72 + 1.25)
Location | 10,584,817 – 10,584,916 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 88.85 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -20.54 |
Energy contribution | -21.65 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.14 |
Mean z-score | -3.07 |
Structure conservation index | 0.75 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10584817 99 - 20766785 GAAACCUCAGUGAAGGCUUAAUGCAGCCAGCCAAAGGGAAGCUGAUGGCAAAGCCCCACUGAACCGAGCA--------UCAUAAAUAAAAGAAAUGAAAUCAUUUCG ......((((((..((((......)))).((((..((....))..)))).......))))))........--------............((((((....)))))). ( -27.70) >DroSec_CAF1 33840 99 - 1 GAAACCUCAGUGAAGGCUUAAUGCAGCCAGCCAAAGGGAAGCUGAUGGCGAAGCCCCACUGAACCGAGCA--------UCAUAAAUAAAAGAAAUGAAAUCAUUUCG ......((((((..(((((....((((...((....))..))))......))))).))))))........--------............((((((....)))))). ( -28.00) >DroSim_CAF1 33168 99 - 1 GAAACCUCAGUGAAGGCUUAAUGCAGCCAGCCAAAGGGAAGCUGAUGGCGAAGCCCCACUGAACCGAGCA--------UCAUAAAUAAAAGAAAUGAAAUCAUUUCG ......((((((..(((((....((((...((....))..))))......))))).))))))........--------............((((((....)))))). ( -28.00) >DroEre_CAF1 33278 99 - 1 GAAACCUCAGUGAAGGCUUAAUGCAGCCAGCCAAAGGAAAGCCGAAGGCGAAGCCCCACUGAACCGAGCA--------UCAUAAAUAAAAGAAAUGAAAUCAUUUCG ......((((((..((((......)))).(((...((....))...))).......))))))........--------............((((((....)))))). ( -26.00) >DroYak_CAF1 40348 99 - 1 GAAACCUCAGUGAAGGCUUAAUGCAUCCAGCCAAAAGGAAGCUGAAGGCAAAGCCCCACUGAACCGAGCA--------UCAUAAAUAAAAGAAAUGAAAUCAUUUCG ......((((((..(((((..(((...((((.........))))...)))))))).))))))........--------............((((((....)))))). ( -27.50) >DroAna_CAF1 67176 99 - 1 GAAAUCUCAGUGAAGGCUUAAUGCUGC-AGCCUCAGC-UACCAAAAGGCGA------ACCGAACGGAGCAGUUUGGCGUCAUAAAUAAAAGAAAUGAAAUCAUUUCG .........((((..(((....(((((-.((((....-.......))))..------.((....)).)))))..))).))))........((((((....)))))). ( -26.10) >consensus GAAACCUCAGUGAAGGCUUAAUGCAGCCAGCCAAAGGGAAGCUGAAGGCGAAGCCCCACUGAACCGAGCA________UCAUAAAUAAAAGAAAUGAAAUCAUUUCG ......((((((..((((......)))).((((..((....))..)))).......))))))............................((((((....)))))). (-20.54 = -21.65 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:23 2006