Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,582,992 – 10,583,084 |
Length | 92 |
Max. P | 0.982608 |
Location | 10,582,992 – 10,583,084 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 72.33 |
Mean single sequence MFE | -15.54 |
Consensus MFE | -8.48 |
Energy contribution | -9.32 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.31 |
Mean z-score | -2.16 |
Structure conservation index | 0.55 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10582992 92 - 20766785 GCCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCAAACACCCAUCCACACCCAUCCACACUUUAUCGCCUGGGUGAGGCAGUAAAU (((.(((((.((((.........)))).)))))....................((((((..(..........)..)))))).)))....... ( -21.30) >DroSec_CAF1 32020 89 - 1 -CCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCCAACACCCACCCAC--ACAUCCUCACCUUAUCGCCUGGGUUAGGCAGUAAAU -...(((((.((((.........)))).))))).....................--((..(((.((((........)))).)))..)).... ( -15.90) >DroSim_CAF1 31382 89 - 1 -CCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCAAACACCCACCCAC--CCAUCCACACCUUAUCGCCUGGGUGAGGCAGUAAAU -...(((((.((((.........)))).)))))................(((((--(((..(..........)..)))))).))........ ( -18.60) >DroEre_CAF1 31481 77 - 1 -CCCCGGGUAGAAAUAAUCAAAUUUUUUGCCUGCCAAUCCAUACACCCAC--------------ACUUUAUCGCCCAGGUGAGGCAAUAAAU -...((((((((((.........)))))))))).................--------------..(((((.((((....).))).))))). ( -15.10) >DroAna_CAF1 65349 73 - 1 -CCCCAGGUCAGAAUAAUCAAAUUUGUAGCAU--------CAACACACACCU----CUCUCCACAUCAACUCCACU------GGCAGUGGCU -..(((.(((((.((((......)))).(...--------...)........----..................))------)))..))).. ( -6.80) >consensus _CCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCAAACACCCACCCAC__CCAUCCACACCUUAUCGCCUGGGUGAGGCAGUAAAU ....(((((.((((.........)))).)))))................................(((((((.....)))))))........ ( -8.48 = -9.32 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:19 2006