Locus 3090

Sequence ID 2R_DroMel_CAF1
Location 10,582,777 – 10,582,872
Length 95
Max. P 0.500000
window5103

overview

Window 3

Location 10,582,777 – 10,582,872
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.37
Mean single sequence MFE -26.62
Consensus MFE -15.86
Energy contribution -16.62
Covariance contribution 0.75
Combinations/Pair 1.33
Mean z-score -1.72
Structure conservation index 0.60
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10582777 95 - 20766785
UCUGACCAAUGGUAAACAGCUUUACGACCAAUUCGUAAAAAGGCCAUUGAG--CUGAAAGCACUUGGACUUGGCAAGUGCC-CCGAAUGGGCUACU-UU
((.(..(((((((.......(((((((.....)))))))...)))))))..--).))..(((((((.......)))))))(-((....))).....-.. ( -26.50)
>DroSec_CAF1 31806 96 - 1
UCUGACCAAUGGUAAACAGCUUUACGACCAAUUCGUAAAAAGGCCAUUGAG--CUGAAAGCACUUGGACUUGGCAAGUGCCCCCGAAUGGGAUACU-UU
((.(..(((((((.......(((((((.....)))))))...)))))))..--).))..(((((((.......))))))).(((....))).....-.. ( -27.20)
>DroSim_CAF1 31168 96 - 1
UCUGACCAAUGGUAAACAGCUUUACGACCAAUUUGUAAAAAGGCCAUUGAG--CUGAAAGCACUUGGACUUGGCAAGUGCCCCCGAAUGGGCUACU-UU
((.(..(((((((.......(((((((.....)))))))...)))))))..--).))..(((((((.......))))))).(((....))).....-.. ( -24.40)
>DroEre_CAF1 31283 95 - 1
UCAGCCCAUUGGUAAACAGCUUUACGACCAAUUCGUAAAAAGGCCAUUGAG--CUGAGAGCACUUGGACUUGGCAAGUGCC-UCGAAUGGGCUACU-UU
..(((((((((((.......(((((((.....)))))))...)))......--.((((.(((((((.......))))))))-)))))))))))...-.. ( -34.20)
>DroYak_CAF1 38252 95 - 1
UCUGACCGAUGGUAAACAGCUUUACGACCAAUUCGUAAAAAGGCCAUUCAG--CUGAAAGCACUUAGACUUGGCAAGUGCG-CUGAAUGGGCUACU-UU
.((((((...)))...))).(((((((.....))))))).((.((((((((--(.....((((((.(......))))))))-)))))))).))...-.. ( -28.90)
>DroPer_CAF1 61832 94 - 1
AAAAGGCAAUAAUAAACAGCUUAGUUGCCUAUUCGAAGGAAGUCUAUUGAUGAGUGAGGGCUCU---ACUUG-AAAGUGCA-CAUCAAGACCUAUGUAU
...(((((((.............))))))).(((....)))((((..(((((.(((....(...---....)-....))).-)))))))))........ ( -18.52)
>consensus
UCUGACCAAUGGUAAACAGCUUUACGACCAAUUCGUAAAAAGGCCAUUGAG__CUGAAAGCACUUGGACUUGGCAAGUGCC_CCGAAUGGGCUACU_UU
......(((((((.......(((((((.....)))))))...)))))))..........(((((((.......)))))))................... (-15.86 = -16.62 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:18 2006