Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,578,849 – 10,578,943 |
Length | 94 |
Max. P | 0.942463 |
Location | 10,578,849 – 10,578,943 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -22.81 |
Consensus MFE | -19.68 |
Energy contribution | -20.52 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.86 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10578849 94 - 20766785 CUU-UUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGAACAGCUUGAGCUAAAAAUAAAUCUUUGGGAAAUAGAUUCGAUUGAAAAGCCAAAC ..(-(((((........(((....)))..(((((........(((....))).......(((((.........))))).)))))....)))))). ( -19.60) >DroSec_CAF1 27899 95 - 1 CUUUUUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAAUCUCUGGGAAAUAGGUUCGAUUGAAAAGCCAAAG ...((((((........(((....))).....(((((((((((((....))).........((.....))....)))))).))))...)))))). ( -25.20) >DroSim_CAF1 27242 95 - 1 CUUUUUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAAUCUCUGGGAAAUAGGUUCGAUUGAAAAGCCAAAG ...((((((........(((....))).....(((((((((((((....))).........((.....))....)))))).))))...)))))). ( -25.20) >DroEre_CAF1 27483 94 - 1 CUU-UUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAGUCUCUGCGAAGUAGGAUCGAUGGAAAAGCCAAAU ..(-(((((....(((.(((....))).........(((.((.((((..((...............)).)))).)).)))..)))...)))))). ( -22.36) >DroYak_CAF1 34225 94 - 1 CUU-UUGGCCAACUCCCGGCAAUUGCCCACAAUCAGCGGACCAGCUUGGGCUAAAAAUAAAUCGCAGCAAAAUAGGUUCGAUUGAAAAGCCACAG ...-.((((........(((....))).....(((((((((((..(((.((............))..)))..).)))))).))))...))))... ( -21.70) >consensus CUU_UUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAAUCUCUGGGAAAUAGGUUCGAUUGAAAAGCCAAAG ....(((((........(((....))).....(((((((((((((....))).........((.....))....)))))).))))...))))).. (-19.68 = -20.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:17 2006