Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,577,293 – 10,577,390 |
Length | 97 |
Max. P | 0.685111 |
Location | 10,577,293 – 10,577,390 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -37.38 |
Consensus MFE | -25.50 |
Energy contribution | -28.06 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.74 |
Structure conservation index | 0.68 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10577293 97 + 20766785 UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC----AAAG------------UGGGUGUUGGCUGGGCGGCAAAGGACCAAAGGCGGAGGCGCC ...((((((((((..((((.(((.......)))..((......))......----....------------))))..))))))))))(((....).))...((((....)))) ( -37.40) >DroSec_CAF1 26316 97 + 1 UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC----AAAG------------UGGGUGUUGGCCGGGUGGCGAAGGACCAACGGCGGAGGCGCC ...((((((((((..((((.(((.......)))..((......))......----....------------))))..))))))))))(((....).))...((((....)))) ( -39.90) >DroSim_CAF1 25683 97 + 1 UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC----AAAG------------UGGGUGUUGGCCGGGUGGCGAAGGACCAACGGCGGAGGCGCC ...((((((((((..((((.(((.......)))..((......))......----....------------))))..))))))))))(((....).))...((((....)))) ( -39.90) >DroEre_CAF1 26061 80 + 1 UUUGC-CGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGUGGCUG-----------------------------GGUGGCUGGGAGGCGAAGGACCAAAGGCGGAG---CC (((((-((((((.(((((..(((.......)))...))))))))))(-----------------------------(.(.(((....))).)....))...)))))).---.. ( -27.00) >DroYak_CAF1 32707 110 + 1 UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGGCGUAACAGUGGGUGUACCAGUGGGCGGUGGCUGGGAGGCGAAGGACCAAAGGCGGAG---CC ....((((((((.((((((.((....(.(((((..(..(((..(....)..)))..)..))))).)..)).)))))).)))))))).(((....).))...(((...)---)) ( -42.70) >consensus UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC____AAAG____________UGGGUGUUGGCUGGGAGGCGAAGGACCAAAGGCGGAGGCGCC ...((((((((((((((((.(((.......)))..((......))..........................))))))))))))))))(((....).))...((((....)))) (-25.50 = -28.06 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:14 2006