Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,052,007 – 2,052,105 |
Length | 98 |
Max. P | 0.653677 |
Location | 2,052,007 – 2,052,105 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.84 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -20.02 |
Energy contribution | -21.30 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.90 |
Structure conservation index | 0.74 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2052007 98 + 20766785 CUUUUAUCGAUUCCAUUAUGGCCAACUUCCUGGGCCAACUCGAAAGAGUUUGUGACUUGGACACGAAAAUCUAUAUUCAGCUCUGGCCAGAUGACCCC .............((((.((((((...(((.((((.(((((....))))).))..)).)))...(((........))).....))))))))))..... ( -24.90) >DroSec_CAF1 36909 98 + 1 CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAACUCGAAGGAGCUUGAGACUCGGACACGAAAAUCUAUUUUCAGCUCUGGCCAGAUGACCCC .............(((((.(((((.....((((((((((((....))).))).).)))))....(((((....))))).....))))))))))..... ( -26.50) >DroSim_CAF1 37539 98 + 1 CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAACUCGAAAGAGCUUGAGACUCGGACACGAACAUCUAUUUUCAGCUCUGGCCAGAUGACCCC .............(((((.(((((.....((((((((((((....))).))).).)))))....(((........))).....))))))))))..... ( -25.70) >DroEre_CAF1 36574 98 + 1 CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGCCCAAGUCGAAAGAGCCGGAGGCUCGGACACGAAAAUCUAUUUUCAACUCCGGCCGGAUGACCUC ......((.((((......(((((......)))))....((....))(((((((....(....)(((((....)))))..))))))).)))))).... ( -30.30) >DroYak_CAF1 39548 98 + 1 CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAAGUCGAAAGAGCUUGAGACUCGGACACGAAAAUCAAUUUUCAGCUCUGGCCAGAUGACCUC .............(((((.(((((.....((((((((((((....)).)))).).)))))....(((((....))))).....))))))))))..... ( -27.60) >consensus CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAACUCGAAAGAGCUUGAGACUCGGACACGAAAAUCUAUUUUCAGCUCUGGCCAGAUGACCCC .............(((((.((((....(((.((.(((((((....))).))).).)).)))...(((((....)))))......)))))))))..... (-20.02 = -21.30 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:05 2006