Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,546,536 – 10,546,642 |
Length | 106 |
Max. P | 0.986698 |
Location | 10,546,536 – 10,546,642 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.52 |
Mean single sequence MFE | -21.52 |
Consensus MFE | -15.32 |
Energy contribution | -15.88 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.24 |
Mean z-score | -2.19 |
Structure conservation index | 0.71 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10546536 106 + 20766785 CGGGAGGGGCACAACAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCAACGUCCCACCCCCUUCAAAAAUCAGCAGCCCCAUCACAGUCA---------- ...(((((((............----...........((..((((((....))))))..)).(((.....)))......................))))).)).......---------- ( -22.20) >DroSec_CAF1 44404 91 + 1 CGGGAGGGGCACAACAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCACCGCUCCACUCCCCU---------------CCAUCAUACUCA---------- .(((((((((............----...........((..((((((....))))))..)).(......))).)).)))))..---------------............---------- ( -21.60) >DroSim_CAF1 36200 91 + 1 CGGGAGGGGCACAACAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCAUCGCCCCACUCCCCU---------------CCAUCAUACUCA---------- .(((((((((............----...........((..((((((....))))))..)).((....)))))))..))))..---------------............---------- ( -24.60) >DroEre_CAF1 40961 97 + 1 -CGGAGGGGCACAGCAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAUUCCCAUA--CCCACCCACCA------UCAGCAUGGCCAUCACACUCA---------- -.((.(((((...)).......----...........((..((((((....))))))..)).........--))).))..(((------(....))))............---------- ( -17.40) >DroYak_CAF1 40908 112 + 1 UGGGAGUGGCACAACAAUAAACAAACAAACAUUUCGAGGUCGUUAAGGCUCCUUGACCCCCAUCCCCAUU--CCCACCCACCA------UCAACAUCUGAAUCACACUCACACCCACACC (((((((((....................(.....).((..((((((....))))))..))....)))))--)))).......------............................... ( -21.80) >consensus CGGGAGGGGCACAACAAUAAAC____AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCAUCG_CCCACCCCCCU______UCA_CA___CCAUCACACUCA__________ .(((.(((((...................(.....).((..((((((....))))))..)).........))))).)))......................................... (-15.32 = -15.88 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:58 2006