Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,546,279 – 10,546,383 |
Length | 104 |
Max. P | 0.520696 |
Location | 10,546,279 – 10,546,383 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.35 |
Mean single sequence MFE | -34.98 |
Consensus MFE | -28.56 |
Energy contribution | -28.60 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 0.82 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10546279 104 + 20766785 AU------GGAAUCGGUGUGGCCUCUUGGACGCUCUAAUUUGUGCAGACCGCAGAGUUCAUAGCAAAUUAGUUGAUUAGUUUAACGUCGAUGGGGCCCGAAUGGGUCC----------GA .(------(((.((.((..((((((.(.((((((....((((((.....))))))......)))......(((((.....)))))))).).))))))...)).)))))----------). ( -32.30) >DroSec_CAF1 44147 103 + 1 AU------GGAAUCGGUGUGGCCUCUUGGACGCUCUAAUUUGUGCAGACCGCAGAGUUCAUAGCAAAUUAGUUGAUUAGUUUAACGUCGAUGGGGC-CGAAUGGGUCC----------GA .(------(((..((...(((((((.(.((((((....((((((.....))))))......)))......(((((.....)))))))).).)))))-))..))..)))----------). ( -34.10) >DroSim_CAF1 35943 103 + 1 AU------GGAAUCGGUGUGGCCUCUUGGACGCUCUAAUUUGUGCAGACCGCAGAGUUCAUAGCAAAUUAGUUGAUUAGUUUAACGUCGAUGGGGC-CGAAUGGGUCC----------GA .(------(((..((...(((((((.(.((((((....((((((.....))))))......)))......(((((.....)))))))).).)))))-))..))..)))----------). ( -34.10) >DroEre_CAF1 40697 119 + 1 AUGGAAAUGGCAUCGGUGUGGCCUCUUGGACGCUCUAAUUUGUGCGGACCGCAGAGUUCAUAGCAAAUUAGUUGAUUAGUUUAACGUCGAUGGGGC-CGAAUGGGUCCGAAUGGGUCCGA .((((.....(((((.((((..(((((((.(((.(......).)))..))).))))..)))).)......(((((.....)))))...))))((((-(.....))))).......)))). ( -38.70) >DroYak_CAF1 40632 119 + 1 AUGGAAAUGGAAUCGGUGUGGCCUCUUGGACGCUCUAAUUUGUGCAGACCGCAGAGUUCAUAGCAAAUUAGUUGAUUAGUUUAACGUCGAUCGGGC-CAAAUGGGUCCGAAUGCGACCAA ..............(.((((..(((((((.(((.(......).)).).))).))))..)))).)......(((((.....)))))((((.((((((-(.....)))))))...))))... ( -35.70) >consensus AU______GGAAUCGGUGUGGCCUCUUGGACGCUCUAAUUUGUGCAGACCGCAGAGUUCAUAGCAAAUUAGUUGAUUAGUUUAACGUCGAUGGGGC_CGAAUGGGUCC__________GA ........((.(((.((.(((((((.(.((((((.....((.(((.....))).)).....)))......(((((.....)))))))).).))))).)).)).)))))............ (-28.56 = -28.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:57 2006