| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,545,262 – 10,545,377 |
| Length | 115 |
| Max. P | 0.500000 |
| Location | 10,545,262 – 10,545,377 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.73 |
| Mean single sequence MFE | -25.61 |
| Consensus MFE | -15.33 |
| Energy contribution | -17.42 |
| Covariance contribution | 2.09 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10545262 115 - 20766785 UGCAAAUGGUUAAACUUUUGGUGCCAUGGAAAAUUAAUUUU---UUU--UCUCCUCUCCCCCAAUAUCCUGUUAAAGUUUUCCACACUCUUGGGAGACCCACGAGGGUCUCCACGUCGAC ......(((..((((((((((......((((((........---)))--)))........)))..........))))))).)))........((((((((....))))))))........ ( -25.84) >DroSec_CAF1 43127 118 - 1 UGCAAAUGGUUAAACUUUUGCUACCAUGGCAAAUUAAUUUUUUUUUU--UCUCCUCUCCCCCAAUAUCCUGUAAAAGUUUUCCACACUCUUGGGAGACCCACGAGGGUCUCCACGUCGAC ......(((..((((((((((.....(((..................--...........))).......)))))))))).)))........((((((((....))))))))........ ( -27.35) >DroSim_CAF1 34933 116 - 1 UGCAAAUGGUUAAACUUUUGCUGCCAUGGAAAAUUAAUUUUU--UUU--UCUCCUCUCCCCCAAUAUCCUGUAAAAGUUUUCCACACUCUUGGGAGACCCACGAGGGUCUCCACGUCGAC ......(((..((((((((((......((((((........)--)))--))...................)))))))))).)))........((((((((....))))))))........ ( -28.51) >DroEre_CAF1 39716 108 - 1 UGCAAAUGGUUAAACUUUUGCGUCCAUGGAAAAUUAAUUUUUC------GCUCCUCUCCCC-AAUAUCCUGCAAAAGUUUUCCACACUCUGGGGA---CUGUGAG--UCUCCCAGUCGAC ......(((..(((((((((((....(((..............------..........))-)......))))))))))).)))....(((((((---(.....)--)).)))))..... ( -25.66) >DroYak_CAF1 39621 104 - 1 UGCAAAUGGUUAAACUUUUGC-----UGGAAAAUUAAUUUUUUUUUUCUCCCCCUCUCCCU-CAGAUCCUGGAAAAGUUUUACACACUCUUGGGAG--CUGCGAGGGUAUC--------C .(((((.(......).)))))-----.((((((..........))))))..(((((.....-(((.(((..(...(((.......))).)..))).--))).)))))....--------. ( -20.70) >consensus UGCAAAUGGUUAAACUUUUGCUGCCAUGGAAAAUUAAUUUUU__UUU__UCUCCUCUCCCCCAAUAUCCUGUAAAAGUUUUCCACACUCUUGGGAGACCCACGAGGGUCUCCACGUCGAC ......(((..((((((((((......(((....................................))).)))))))))).)))........((((((((....))))))))........ (-15.33 = -17.42 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:56 2006