Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,543,815 – 10,543,935 |
Length | 120 |
Max. P | 0.677817 |
Location | 10,543,815 – 10,543,935 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.92 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -18.92 |
Energy contribution | -18.96 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.79 |
Structure conservation index | 0.81 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10543815 120 + 20766785 AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACAGAGAUAUAUGGAUAAUGUCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU .......((((.((((((...(((..((((......))))..((((..((........))..))))............))).((((.....))))..)))))).))))............ ( -19.60) >DroSec_CAF1 36935 120 + 1 AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUAUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU .......((((.((((((..((((((((((......)))..(((((((....)))))))..))))..(((((..........)))))....).))..)))))).))))............ ( -22.20) >DroSim_CAF1 33496 120 + 1 AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUAUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU .......((((.((((((..((((((((((......)))..(((((((....)))))))..))))..(((((..........)))))....).))..)))))).))))............ ( -22.20) >DroEre_CAF1 38324 120 + 1 AAUCUGGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUGUGUGGAUAACGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU .......((((.((((((..((((((((((......)))(((((((((....)))))))))))))...((((..........)))).....).))..)))))).))))............ ( -26.10) >DroYak_CAF1 38196 120 + 1 AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACAAAGUUGUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCGGACCAUUAAGUUUUAUAAAAACAAAU .......((((.((((((..(((...((((......))))..((((..((((....))))..)))).(((((..........)))))....)))...)))))).))))............ ( -26.90) >consensus AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUAUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU .......((((.((((((...(((..((((......))))..((((..((........))..))))............))).((((.....))))..)))))).))))............ (-18.92 = -18.96 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:51 2006