Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,543,359 – 10,543,470 |
Length | 111 |
Max. P | 0.537917 |
Location | 10,543,359 – 10,543,470 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -33.29 |
Consensus MFE | -29.22 |
Energy contribution | -29.22 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.88 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10543359 111 - 20766785 UGGCC-------AGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGC--AUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU (((((-------(((((((((((.....))).))))))))..)))))......(((((--((((.....((((.((...)).))))........((.........))....))))))))) ( -32.40) >DroSim_CAF1 33038 111 - 1 UGGCC-------AGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGC--AUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU (((((-------(((((((((((.....))).))))))))..)))))......(((((--((((.....((((.((...)).))))........((.........))....))))))))) ( -32.40) >DroEre_CAF1 37890 110 - 1 UGGCC-------AGAUUAAUGGCUGCGAGCUGAUUAGUUUGGGGCCAAGACAAA-GGC--AUCACAAAAGGCCAACUCUGUGGGCCUUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU (((((-------.((((((((((.....))).)))))))...))))).....((-(((--((((...((((((.((...)).))))))......((.........))....))))))))) ( -34.40) >DroYak_CAF1 37753 120 - 1 UGGCCAGAUGCCAGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGCAUAUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU (((((..(((((.......(((((.((((((....)))))).)))))........))))).........))))).((((((.............)))))).....(((......)))... ( -33.98) >consensus UGGCC_______AGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGC__AUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU (((((..............(((((.((((((....)))))).)))))........(........)....))))).((((((.............)))))).....(((......)))... (-29.22 = -29.22 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:49 2006