Locus 3071

Sequence ID 2R_DroMel_CAF1
Location 10,542,557 – 10,542,675
Length 118
Max. P 0.918195
window5071

overview

Window 1

Location 10,542,557 – 10,542,675
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.23
Mean single sequence MFE -22.95
Consensus MFE -20.46
Energy contribution -20.86
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.89
SVM decision value 1.12
SVM RNA-class probability 0.918195
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10542557 118 - 20766785
UGUGGGUUUUCGACCACGUCCCUGGCAGUUUAAUUGAGGCAACACGAGAAAUAAUAAGAGGA-A-AAACUCUAACAAAACAAAAAGAUACAAACAAACAACUGACGCUGUUCGAAAACAG
.....((((((((.((((((..((...((((..(((.(....).))).........((((..-.-...))))..................))))...))...)))).)).)))))))).. ( -24.60)
>DroSec_CAF1 35739 115 - 1
UGUGGGUUUUCGACCACGUCCCUGGCAGUUUAAUUGAGGCAACACGAGAAAUAAUAAGAGGA-AAAAACUCUAACAAAACAAAAAGAUACAA----ACAACUGACGCUGUUCGAAAACAG
.....((((((((.((((((...((..((((..(((.(....).))).........((((..-.....))))..................))----))..)))))).)).)))))))).. ( -23.20)
>DroSim_CAF1 32222 115 - 1
UGUGGGUUUUCGACCACGUCCCUGGCAGUUUAAUUGAGGCAACACGAGAAAUAAUAAGAGGA-AAAAACUCUAACAAAACAAAAAGAUACAA----ACAACUGACGCUGUUCGAAAACAG
.....((((((((.((((((...((..((((..(((.(....).))).........((((..-.....))))..................))----))..)))))).)).)))))))).. ( -23.20)
>DroEre_CAF1 37083 115 - 1
UGUGGGUUUUCGACCACGUCCCUGGCAGUUUAAUUGAGGCAACACGAGAAAUAAUAAGAGAGAAAAAACUCUAACAAAACAA-AAGAUACAA----GCAACUGACGCUGCUCGAAAACAG
.....((((((((.((((((....((.......(((.(....).)))...........((((......))))..........-.........----))....)))).)).)))))))).. ( -24.80)
>DroYak_CAF1 36953 116 - 1
UGUGGGUUUUCGACCACGUCCCUGGCAGUUUAAUUGAGGCAACACGAGAAAUAAUAAGAGAAAAAAAACUCGAACAAAACAAAAAGAUACAA----ACAACUGACGCUUUUCGAAAACAG
.....(((((((((((......)))(((((...(((.(....).((((....................)))).................)))----..))))).......)))))))).. ( -18.95)
>consensus
UGUGGGUUUUCGACCACGUCCCUGGCAGUUUAAUUGAGGCAACACGAGAAAUAAUAAGAGGA_AAAAACUCUAACAAAACAAAAAGAUACAA____ACAACUGACGCUGUUCGAAAACAG
.....((((((((.((((((..((.........(((.(....).))).........((((........)))).........................))...)))).)).)))))))).. (-20.46 = -20.86 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:48 2006