Locus 3070

Sequence ID 2R_DroMel_CAF1
Location 10,542,379 – 10,542,493
Length 114
Max. P 0.594016
window5070

overview

Window 0

Location 10,542,379 – 10,542,493
Length 114
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 86.02
Mean single sequence MFE -38.14
Consensus MFE -25.99
Energy contribution -25.83
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.68
SVM decision value 0.12
SVM RNA-class probability 0.594016
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10542379 114 - 20766785
UAUGAAAUGUUUGCCAGUGUGGGUAAGUGGUGCACCUGCUCGCAUUUUCGACUG---GUAGCCCCUAUUCAGAGGUG-GGGAGGGGUAUAUAUAUAUCGAGGGGAAAACAGGUCCGGU
...((..(((((.((((((((((((.(((...))).))))))))))(((((...---(((((((((.((((....))-)).))))))...)))...))))).)).)))))..)).... ( -36.80)
>DroSec_CAF1 35565 112 - 1
UAUGAAAUGUUUGCCAGUGUGGGUAAGUGGUGCACCUGCUCGCAUUUUCGACUG---GUAGCCCCUAUUCAAAGGGG-GCUAGGGGUAUA--CAUAUCGAGGGGAAAACAGGUCCGGU
...((..(((((.((((((((((((.(((...))).))))))))))(((((...---((((((((((..(......)-..))))))).))--)...))))).)).)))))..)).... ( -39.50)
>DroSim_CAF1 32046 112 - 1
UAUGAAAUGUUUGCCAGUGUGGGUAAGUGGUGCACCUGCUCGCAUUUUCGACUG---GUAGCCCCUAUCCAAGGGGG-GCUAGGGGUAUA--UAUAUCGAGGGGAAAACAGGUCUGGU
...((..(((((.((((((((((((.(((...))).))))))))))(((((...---(((((((((((((.....))-).))))))).))--)...))))).)).)))))..)).... ( -40.70)
>DroEre_CAF1 36911 102 - 1
UAUGAAAUGUUUGCCAGUGUGGGUAAGUGGUGCACCUGCUCGCAUU-UCGACUG---GUAGCCCCUAUCAAAGAGGGGGC------------UCUUUUGAGGGGAAAACAGGUCCGGU
...((..(((((.((.(((((((((.(((...))).)))))))))(-((((..(---(.(((((((........))))))------------))).))))).)).)))))..)).... ( -36.70)
>DroYak_CAF1 36767 106 - 1
UAUGAAAUGUUUGCCAGUGUGAGUAAGUGGUGCACCUGCUCGCAUUUUCGACUGGCGGUAGCCCCUAUCCAAAGAGGGGC------------CAUUUGGAGGGGAAAACAGGUCCGGU
...((..((((((((((((((((((.(((...))).))))))).......)))))).....((((..((((((..(....------------).)))))))))).)))))..)).... ( -37.01)
>consensus
UAUGAAAUGUUUGCCAGUGUGGGUAAGUGGUGCACCUGCUCGCAUUUUCGACUG___GUAGCCCCUAUCCAAAGGGG_GC_AGGGGUAUA__UAUAUCGAGGGGAAAACAGGUCCGGU
............(((((((((((((.(((...))).))))))))))...((((........(((((.................................)))))......)))).))) (-25.99 = -25.83 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:47 2006