Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,526,168 – 10,526,288 |
Length | 120 |
Max. P | 0.999869 |
Location | 10,526,168 – 10,526,288 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -41.62 |
Consensus MFE | -41.12 |
Energy contribution | -40.80 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -2.44 |
Structure conservation index | 0.99 |
SVM decision value | 4.32 |
SVM RNA-class probability | 0.999869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10526168 120 + 20766785 UUUUGAAGUGGGUUUCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCACGCUUGGACCUGCCAGCUAAAAGACACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUCGUCUCU ..((((((((..(((........)))..))))))))........((((.((((.((((((.((((((((...(((.((((...)))).)))))))..)))).)))))).)))).).))). ( -39.30) >DroSec_CAF1 27019 120 + 1 UUUUGAAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGCCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU ..((((((((..(((........)))..))))))))........(((((((((.((((((.((((((((((.....((((...))))..))))))..)))).)))))).)))))).))). ( -46.10) >DroSim_CAF1 23204 120 + 1 UUUUGAAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGCCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU ..((((((((..(((........)))..))))))))........(((((((((.((((((.((((((((((.....((((...))))..))))))..)))).)))))).)))))).))). ( -46.10) >DroEre_CAF1 29283 120 + 1 UUUUGCAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGUCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU ..(((.((((..(((........)))..)))).)))........(((((((((.((((((..(((((((((.....((((...))))..))))))..)))..)))))).)))))).))). ( -37.80) >DroYak_CAF1 27338 120 + 1 UUUUGAAGUGGCUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGUCAGCUACAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU ..((((((((..(((........)))..))))))))........(((((((((.((((((..((((..((.(((..((((...))))..))).)).))))..)))))).)))))).))). ( -38.80) >consensus UUUUGAAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGCCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU ..((((((((..(((........)))..))))))))........(((((((((.((((((..(((((((...(((.((((...)))).)))))))..)))..)))))).)))))).))). (-41.12 = -40.80 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:22 2006