Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,525,479 – 10,525,599 |
Length | 120 |
Max. P | 0.665710 |
Location | 10,525,479 – 10,525,599 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.19 |
Mean single sequence MFE | -14.41 |
Consensus MFE | -11.12 |
Energy contribution | -11.32 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.77 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10525479 120 + 20766785 ACAACAAACACUUCGAAAAAGUUUGAAGCCCACUCUUAAAUAUUAUCUAGGGAGUACAACUCUUAAAAUCCAACUUAUACGACUCUGCUCAGUCCAGCUCGUAUACAAAACUCUUAUACA ..........(((((((....))))))).....................(((((.....)))))...........(((((((....(((......))))))))))............... ( -15.50) >DroSec_CAF1 26349 120 + 1 ACAACAAACACUUCGAAAAAGUUUGAAGCCCACUCUUAAAUAUUAUUUAAGGAGUCCAACUCUUAAAAUCCAUCUUAUACGACUCUGUUAAGUCCAGCUCGUAUACAAAACUCUUAUACA ..........(((((((....)))))))................((((.(((((.....))))).))))......(((((((..(((.......))).)))))))............... ( -16.30) >DroSim_CAF1 22531 120 + 1 ACAACAAACACUUCGAAAAAGUUUGAAGCCCACUCUUAAAUAUUAUCUAAGGAGUACAACUCUUAAAAUCCAACUUAUACGACUCUGCUAAGUCCAGCUCGUAUACAAAACUCUUAUACA ..........(((((((....))))))).....................(((((.....)))))...........(((((((....(((......))))))))))............... ( -15.80) >DroEre_CAF1 28609 105 + 1 ACAACAAACACUUCGAAAAAGUUUGAAGCCCACUCUCAAAUAUUAU---------------CUUAAAGUCCAACUUAUACGACUCUGCUAAGUCCAGCUCGUAUACAAAACUCUUAUACC ..........(((((((....)))))))..................---------------....(((.......(((((((....(((......)))))))))).......)))..... ( -12.24) >DroYak_CAF1 26663 105 + 1 ACAACAAACACUUCGACAAAGUUUGAAGCCCACCCUCAAAUAUUAU---------------CUUAAAGUCCAACUUAUACGACUCUGCUAACUCCAGCUCGUAUACAAAACUCUGAUACA ..........((((((......))))))...............(((---------------(....(((......(((((((....(((......))))))))))....)))..)))).. ( -12.20) >consensus ACAACAAACACUUCGAAAAAGUUUGAAGCCCACUCUUAAAUAUUAU_UA_GGAGU_CAACUCUUAAAAUCCAACUUAUACGACUCUGCUAAGUCCAGCUCGUAUACAAAACUCUUAUACA ..........(((((((....)))))))...............................................(((((((..(((.......))).)))))))............... (-11.12 = -11.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:21 2006