Locus 3057

Sequence ID 2R_DroMel_CAF1
Location 10,522,426 – 10,522,528
Length 102
Max. P 0.670096
window5034

overview

Window 4

Location 10,522,426 – 10,522,528
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -16.57
Consensus MFE -13.15
Energy contribution -13.27
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.79
SVM decision value 0.29
SVM RNA-class probability 0.670096
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10522426 102 - 20766785
AAAUUAGCAUCGAUUUAAGUCAAGACCGUGGGUAUUAUCCCCAUGGCUUACCUAUGUGACCCCCCAUAACCCUGCAUAACCCCCCGCAUACGCCUCAUAUCC
......(((........((..(((.(((((((.......))))))))))..)).((((......))))....)))..........((....))......... ( -18.80)
>DroSec_CAF1 23363 80 - 1
AAAUUAGCAUCGAUUUAAGUCAAGACCGGGGGUAUUAUCCCCAUGGCUUACCUAUGCGACCCCCCA-AACCCUUCAU---------------------AACC
......((((.(((....)))(((.(((((((......)))).))))))....)))).........-..........---------------------.... ( -16.60)
>DroSim_CAF1 19479 80 - 1
AAAUUAGCAUCGAUUUAAGUCAAGACCGGGGGUAUUAUCCCCAUGGCUUACCUAUGUGACCCCCCA-AACCCUUCAU---------------------AACC
......((((.(((....)))(((.(((((((......)))).))))))....)))).........-..........---------------------.... ( -14.30)
>consensus
AAAUUAGCAUCGAUUUAAGUCAAGACCGGGGGUAUUAUCCCCAUGGCUUACCUAUGUGACCCCCCA_AACCCUUCAU_____________________AACC
......((((.(((....)))(((.(((((((......)))).))))))....))))............................................. (-13.15 = -13.27 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:13 2006