Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,520,269 – 10,520,380 |
Length | 111 |
Max. P | 0.606766 |
Location | 10,520,269 – 10,520,380 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.69 |
Mean single sequence MFE | -28.84 |
Consensus MFE | -18.76 |
Energy contribution | -18.96 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.65 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10520269 111 + 20766785 CCACUACAUACAUGGUUGUUCCUCCUCCUGCUUUUUACACCUGCUGGCUACUAAUAUACACAUAAGUGUGUCUGCACACGUGGCCAGUGCGACGUGAACA-----ACUGCCAUGCA-- ..........(((((((((((..(.((..((...........(((((((((...(((....))).(((((....)))))))))))))))))).).)))))-----...))))))..-- ( -31.00) >DroSec_CAF1 21204 93 + 1 ------------------UGCCUCAUCCUCCUUUUUACACCUCCUGACUACUAAUAUACACAUAAGUGUGUCUGCACACGUGGCCAGUGCGACGUGAACA-----ACUGCCAUGCA-- ------------------.((............................................(((((....)))))(((((.(((............-----)))))))))).-- ( -16.40) >DroSim_CAF1 16412 107 + 1 CCACUAC----AUGGUUGUGCCUCAUCCUCCUUUUUACACCUGCUGGCUACUAAUAUACACAUAAGUGUGUCUGCACACGUGGCCAGUGCGACGUGAACA-----ACUGCCAUGCA-- ......(----(((((.((.......................(((((((((...(((....))).(((((....)))))))))))))).....(....).-----)).))))))..-- ( -29.60) >DroEre_CAF1 23744 109 + 1 CCACUGC----AUG-UUGUGCCAGC---UCCUU-UCACACCUCCUGGCUACUAAUAUACACAUAAGUGUGUCUGAACACGUGGCCAGUGCGACGUGAACAGCGCGACUGCCAUGCACA ....(((----(((-..((((..((---(...(-((((..(.(((((((((....((((((....))))))........)))))))).).)..))))).))))).))...)))))).. ( -33.40) >DroYak_CAF1 21481 104 + 1 CCACUGC----AUGGCUGUGGCAGC---UCCUUUUUACACCUCCUGGCUACUAAUAUACACAUAAGUGUGUCUGAACACGUGGCCAGUGCGACGUGAACA-----ACUGCCAUGCA-- .....((----(((((.((((....---.))......(((.((((((((((....((((((....))))))........))))))))...)).)))....-----)).))))))).-- ( -33.80) >consensus CCACUAC____AUGGUUGUGCCUCCUCCUCCUUUUUACACCUCCUGGCUACUAAUAUACACAUAAGUGUGUCUGCACACGUGGCCAGUGCGACGUGAACA_____ACUGCCAUGCA__ ............................................((((.......((((((....)))))).....(((((.((....)).)))))............))))...... (-18.76 = -18.96 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:12 2006