Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,515,470 – 10,515,590 |
Length | 120 |
Max. P | 0.880527 |
Location | 10,515,470 – 10,515,590 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.58 |
Mean single sequence MFE | -28.47 |
Consensus MFE | -22.75 |
Energy contribution | -22.20 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.13 |
Mean z-score | -2.85 |
Structure conservation index | 0.80 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10515470 120 + 20766785 UGUGCACAUGCAAAACUUACUCAGUAACUAUGCCAGUAAAUGUUUAAAAUGAGUGCUACUUGUAGAAACACAUACUAAAUUUAUGAAAAGCACUGAAUAACAUAUUGUGCGCACGGUUUU ((((((((........(((((..(((....))).)))))(((((.....(.((((((..(..((((.............))))..)..)))))).)..)))))..))))))))....... ( -24.92) >DroSec_CAF1 16038 115 + 1 UGUGCACAUGCAAAACUUACUCAGUAACUAUGUCAGUAAGUGUUUAAAAUGGGUAGUACUUGUAGAAAUACAUACUAAAUUUAUGAAACGCA-----UAUACUAUUGUGCACACGGUUUU (((((((((((...(((((((((.......))..)))))))((((.((((...(((((..((((....))))))))).))))...)))))))-----........))))))))....... ( -28.60) >DroSim_CAF1 11103 115 + 1 UGUGCACAUGCAAAACUUACUCAGUAACUAUGUCAGUAAGUGUUUAAAAUGAGUAGUACUUGUAGAAAUACAUACUACAUUUAUGAAACGCA-----UAUAGUAUUGUGCACACCGUUUU (((((((((((...(((((((((.......))..)))))))((((...((((((((((..((((....))))))))))..)))).))))...-----....))).))))))))....... ( -31.90) >consensus UGUGCACAUGCAAAACUUACUCAGUAACUAUGUCAGUAAGUGUUUAAAAUGAGUAGUACUUGUAGAAAUACAUACUAAAUUUAUGAAACGCA_____UAUAAUAUUGUGCACACGGUUUU (((((((((((((...(((((((.(((.(((........))).)))...)))))))...)))))......((((.......))))....................))))))))....... (-22.75 = -22.20 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:09 2006