Locus 3053

Sequence ID 2R_DroMel_CAF1
Location 10,515,270 – 10,515,370
Length 100
Max. P 0.694523
window5029

overview

Window 9

Location 10,515,270 – 10,515,370
Length 100
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 83.17
Mean single sequence MFE -26.56
Consensus MFE -15.33
Energy contribution -15.01
Covariance contribution -0.32
Combinations/Pair 1.19
Mean z-score -2.21
Structure conservation index 0.58
SVM decision value 0.34
SVM RNA-class probability 0.694523
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10515270 100 - 20766785
UG-CAGACCCA-CCGCAGUU--UUUUAAAGUGCAUGU-------ACACACAGCAUUUUUUGUUGGCGUCGUUGUUUGGUGGUGUAUAUGCAUUAUUAAGAAUACACUCAGC
((-(.......-..)))(((--(((((((((((((((-------((((.(((((.....))))).(..((.....))..)))))))))))))).))))))).))....... ( -28.50)
>DroSec_CAF1 15813 101 - 1
UA-AAGAUCCA-CAUCUUUUUUUUUUUGAGUGCAUGU-------ACACACAGCAUUUUUUGUUGGCAUCGUUGUUUGGU-GUGUAUAUGCAUUAUUAAGAAUACACUCAGC
.(-(((((...-.)))))).(((((...(((((((((-------((((((((((.....))))((((....))))..))-)))))))))))))...))))).......... ( -28.00)
>DroSim_CAF1 10854 101 - 1
UG-CAAAACCA-CCUCCAUUUUUUUUUAAGUGCAUGU-------ACACACAGCAUUUUUUGUUGGCAUCGUUGUUUGGU-GUGUAUAUGCAUUAUUAAGAAUACACUCAGC
..-........-..........(((((((((((((((-------((((((((((.....))))((((....))))..))-))))))))))))..))))))).......... ( -25.70)
>DroEre_CAF1 15902 99 - 1
UGGAGGAGCCAGCUU----GUUUUUCUAAGUGUAGGC-------ACACACAGCAUUUUUUGCUGGCAUCGUUGUUUGGU-GUGUAUAUGCAUUAUUAAGAAUACAGUCAGC
(((((((((......----)))))))))((((((.((-------((((.(((((.....)))))(((....)))...))-))))...)))))).................. ( -28.20)
>DroYak_CAF1 12546 104 - 1
UA-AGCACCCA-CCU----CUUUGUUUAAGUGUAUGUACAGUGUACACACGGCAUUUUUUGUUGGCAUCGUUGUUUGGU-GUGUAUAUGCAUUAUUAAGAAUACACUCAGC
((-((((....-...----...))))))(((((((((((..........(((((.....)))))((((((.....))))-))))))))))))).................. ( -22.40)
>consensus
UG_AAGACCCA_CCUC__UUUUUUUUUAAGUGCAUGU_______ACACACAGCAUUUUUUGUUGGCAUCGUUGUUUGGU_GUGUAUAUGCAUUAUUAAGAAUACACUCAGC
............................(((((((((.......((((.(((((.....)))))(((....)))......))))))))))))).................. (-15.33 = -15.01 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:08 2006