Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,512,918 – 10,513,021 |
Length | 103 |
Max. P | 0.842324 |
Location | 10,512,918 – 10,513,021 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 70.59 |
Mean single sequence MFE | -34.18 |
Consensus MFE | -12.70 |
Energy contribution | -12.26 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.43 |
Mean z-score | -1.91 |
Structure conservation index | 0.37 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842324 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10512918 103 - 20766785 CCGGGUGUUGGGUGCAGGAUGC---AGCUUG-GCAAAUUCAAUUGCAAA-UGGCUGAGGCGCUCAUCGCACAAAAGCCGAAAAC-CCUGAAUCGGGUGGAUAUAUGGCU ....(((((((((((......(---((((..-((((......))))...-.)))))..)))))))..))))...(((((...((-((......)))).......))))) ( -34.70) >DroVir_CAF1 10807 93 - 1 UGAAGUAUUGGUUAGCACAUGUGUGUGCUGGGCGGAAUUCAAUUGCAAAAUGUCGAAGACGUUCGUUCUGCUCAAACUGGCAAA-ACUUACCCG--------------- ..((((.(((...((((((....))))))(((((((((..........((((((...)))))).))))))))).......))).-)))).....--------------- ( -23.80) >DroSec_CAF1 13527 103 - 1 CUGCAUGCUGGGUGCAGGAUGC---AGCUUG-GCAAAUUCAAUUGCAAA-UGGCUGAGGCGCUCAGCGCACAAAAGCCGACAAC-CCUGAAUCGGGUGGAUAUAUGGCU .(((..(((((((((......(---((((..-((((......))))...-.)))))..))))))))))))....(((((...((-((......)))).......))))) ( -38.30) >DroSim_CAF1 8539 103 - 1 CUGGAUGCUGGGUGCAGGAUGC---AGCUUG-GCAAAUUCAAUUGCAAA-UGGCUGAGGCGCUCAGCGCACAAAAGCCGACAAC-CCUGAAUCGGGUGGAUAUAUGGCU .((..((((((((((......(---((((..-((((......))))...-.)))))..))))))))))..))..(((((...((-((......)))).......))))) ( -39.50) >DroEre_CAF1 13712 96 - 1 -------CAGCAUGCAGCAUGC---AGCCUG-GCA-AUUCAAUUGCAUA-UGGCUGAGGCGCUCAGCGCACAAAAGCCGACAACCCCUGAAUCGGGGGAAUAUAUGGCU -------..(((((...)))))---((((((-(((-((...)))))...-(((((...((((...)))).....))))).)).((((((...)))))).......)))) ( -34.60) >consensus CUGGAUGCUGGGUGCAGGAUGC___AGCUUG_GCAAAUUCAAUUGCAAA_UGGCUGAGGCGCUCAGCGCACAAAAGCCGACAAC_CCUGAAUCGGGUGGAUAUAUGGCU ...........((((..(((((...((((...((((......)))).....))))...))).))...)))).....((((...........)))).............. (-12.70 = -12.26 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:01 2006