| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,511,743 – 10,511,863 |
| Length | 120 |
| Max. P | 0.761141 |
| Location | 10,511,743 – 10,511,863 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.97 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -14.46 |
| Energy contribution | -16.02 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10511743 120 - 20766785 CAGUUGCAACUUGCAACUUGCAGCUUCCAGGUUGCUAGUCACCAGUCACCAGUUACAAUUACCAGUUACCAGUUGAAAGCCCAACAAUGCCCCCACAUAUAUUACUGGCAAACUUGGUCC .((((((((........)))))))).(((((((((((((.....((.((..((.......))..)).))..((((......))))..................)))))).)))))))... ( -27.30) >DroSec_CAF1 12381 106 - 1 CAGUUGCAACUUGCAACUUGCAGCUUCCAGGUUGCUAGUCAA-------CAGUUACAAUUAC-------CAGUUGAAAGCUAAACAAUGCCCCCUUAUAUAUUACUGGUUAACUUGGUCC .((((((((........)))))))).((((((((((((((((-------(.((.......))-------..)))))..((........))..............)))).))))))))... ( -25.40) >DroEre_CAF1 12599 106 - 1 CAGUU-------GCAACCUGCAACUUUCAGGUUGCUAGUCAC-------CAGUUACAAUUACCAGUUGCCAGUUGAAAGCUCAACAAUGCCCCCUCAUAUAUUACUGGCUAACUUUGUCU .....-------((((((((.......)))))))).......-------.....((((.....(((((((((((((..((........))....)))......)))))).)))))))).. ( -23.70) >DroYak_CAF1 9059 113 - 1 CAGUUUCAACUUGCAACUUGCAACUUCCAGGUUGCUAGUCAC-------CAUCUACAAUUACCAGUUGCCAGUUGAAAGCUCAACAAUGCCCCCCCACAUAUUACGGCUCAACUUUGUCU ...((((((((.((((((.((((((....))))))(((....-------...)))........)))))).))))))))((........))...............(((........))). ( -25.60) >consensus CAGUUGCAACUUGCAACUUGCAACUUCCAGGUUGCUAGUCAC_______CAGUUACAAUUACCAGUUGCCAGUUGAAAGCUCAACAAUGCCCCCUCAUAUAUUACUGGCUAACUUGGUCC .((((((((........)))))))).(((((((((((((................(((((..........)))))...((........)).............)))))).)))))))... (-14.46 = -16.02 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:59 2006