Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,510,500 – 10,510,599 |
Length | 99 |
Max. P | 0.684534 |
Location | 10,510,500 – 10,510,599 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -19.30 |
Consensus MFE | -17.99 |
Energy contribution | -17.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.71 |
Structure conservation index | 0.93 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10510500 99 + 20766785 ---GGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGCCCCCCGACCUGUCCUGCACCCCACCACACACA ---.(((..((((((((....(((((.....)))))....))))(((.(..((((((......))))))....).))).)))).)))............... ( -19.30) >DroSec_CAF1 11145 102 + 1 AACGGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGCCCCCCGACCUGUCCUGUACCCCACCCCACACA ..(((....((((.(((....(((((.....)))))....)))))))....((((((......))))))....))).......................... ( -18.20) >DroYak_CAF1 7835 99 + 1 AACGGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGC---CCGACCUGUCCUGUCCCCCACUACACACA ...((((..((((((((....(((((.....)))))....))))(((.(..((((((......)))))).---.)))).)))).)))).............. ( -20.40) >consensus AACGGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGCCCCCCGACCUGUCCUGUACCCCACCACACACA ....(((..((((((((....(((((.....)))))....))))(((.(..((((((......))))))....).))).)))).)))............... (-17.99 = -17.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006