Locus 3045

Sequence ID 2R_DroMel_CAF1
Location 10,499,628 – 10,499,721
Length 93
Max. P 0.519656
window5016

overview

Window 6

Location 10,499,628 – 10,499,721
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 96.40
Mean single sequence MFE -24.50
Consensus MFE -21.73
Energy contribution -22.40
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.89
SVM decision value -0.03
SVM RNA-class probability 0.519656
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10499628 93 + 20766785
CAGUUUGGAUCGGCUUUGUUUUGGUCGUCGGAAUUGUUAAUGACAUUCAAUGAUUGCGCUUGUUUAUGUAGUUGAACUUAGGCAGUCAUUUCC
((((((.((.(((((.......))))))).))))))............(((((((((.((.(((((......)))))..)))))))))))... ( -26.70)
>DroSim_CAF1 12952 92 + 1
CAGUUUGGAUCGGCUUUGUU-UGGUCGUCGGAAUUGUUAAUGACAUUCAAUGAUUGCGCUUGUUUAUGUAGUUGAACUUAGGCAGUCAUAUCC
((((((.((.(((((.....-.))))))).)))))).............((((((((.((.(((((......)))))..)))))))))).... ( -26.90)
>DroYak_CAF1 13191 92 + 1
CAGUUUGCAUCGGCUUUGUU-UGGUCGUCGGAAUUGUUAAUGACAUUCAAUGAUUGCGCUUAUUUAUGUAGUUGAACCUAGGCAGUCAUUUCC
((((((.(..(((((.....-.)))))..)))))))............(((((((((.((..((((......))))...)))))))))))... ( -19.90)
>consensus
CAGUUUGGAUCGGCUUUGUU_UGGUCGUCGGAAUUGUUAAUGACAUUCAAUGAUUGCGCUUGUUUAUGUAGUUGAACUUAGGCAGUCAUUUCC
((((((.((.(((((.......))))))).)))))).............((((((((.((.(((((......)))))..)))))))))).... (-21.73 = -22.40 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:56 2006