Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,490,551 – 10,490,650 |
Length | 99 |
Max. P | 0.941260 |
Location | 10,490,551 – 10,490,650 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 73.61 |
Mean single sequence MFE | -20.47 |
Consensus MFE | -14.78 |
Energy contribution | -14.18 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.25 |
Mean z-score | -1.57 |
Structure conservation index | 0.72 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10490551 99 + 20766785 UUAUAUACAUACCU------------ACAUAGAUUCAUAAUUUUCUCGCUUUCCGUUAGCGGAGUCCAAAAUUGUUUUUUGGUUUUUUUGGUUUUCCGACUGACGCAUUCA ..............------------...........................(((((((((((.((((((..............))))))..))))).))))))...... ( -18.34) >DroSec_CAF1 3949 109 + 1 UUAUAUACAUACGUACAAACAUAUGUACAUAGAUUCCUAUUUUUCUCGCGGUCCGUUAGCGGGGUCCAAAAUC-UUUUUUG-GUUUUUUGGUUUUCCGACUGACGCAUUCG ((((.((((((.((....)).)))))).))))................(((..(((((((((((.((((((.(-(.....)-)..))))))..))))).))))))...))) ( -25.10) >DroSim_CAF1 3739 102 + 1 UUAUAUACAUACGUACA--------UACAUAGAUUCCUAUUUUUCUCGCGGUCCGUUAGCGGGUUCCAAAAUC-UUUUUUGGGUUUUUUGGUUUUCCGACUGACGCAUUCG ...........(((...--------...((((....)))).......)))...((((((((((..((((((.(-((....)))..))))))...)))).))))))...... ( -21.22) >DroEre_CAF1 3990 76 + 1 UAAUAU--------------------------AUUCCUACAUUUCUCGGGUUCCGUUAGUGGGGACCAAAAUG-GU--------AUUUUGGUUUUCUGACUGACGCAUUCG ......--------------------------..............(((((..((((((((..(((((((((.-..--------)))))))))..)..))))))).))))) ( -21.10) >DroYak_CAF1 4078 83 + 1 UUAUAU--------------------------AUUCCUACUUUUCUCGCGGUCCGUUAGUAAGGUCCAAAAUG-GUUUUUG-GUUUUUUGGUUUUCUGACUGACGCAUUCG ......--------------------------...............(((.((.(((((.((((.((((((..-.......-...))))))))))))))).)))))..... ( -16.60) >consensus UUAUAUACAUAC_U____________ACAUAGAUUCCUACUUUUCUCGCGGUCCGUUAGCGGGGUCCAAAAUC_UUUUUUG_GUUUUUUGGUUUUCCGACUGACGCAUUCG .....................................................((((((((((..((((((..............))))))...)))).))))))...... (-14.78 = -14.18 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:49 2006