| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,484,121 – 10,484,211 |
| Length | 90 |
| Max. P | 0.754457 |
| Location | 10,484,121 – 10,484,211 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.37 |
| Mean single sequence MFE | -13.36 |
| Consensus MFE | -9.88 |
| Energy contribution | -9.68 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10484121 90 + 20766785 UAACCAUAAUUAUUUUUAGUUGCUCAGCGUUU-UUGCUGCCAACUUCAAAACCGCAACUCCGCUUCAUUGUACAUCAAU-----------CAAUAUGUGUGU ..((((((....(((..(((((..(((((...-.))))).)))))..)))...((......))................-----------...)))).)).. ( -13.80) >DroGri_CAF1 103310 97 + 1 ----CAUAAUUAUUUUUAGUUGCUCAGCAUUU-UUGCUGCUAACUUCAAAACCGCAACUCCGCUACAAUGUAUAUACACACAUACACACACAAUAAUUGAUA ----..((((((((...((((((.(((((...-.)))))..............)))))).........(((((........))))).....))))))))... ( -14.56) >DroEre_CAF1 85477 90 + 1 UAACCAUAAUUAUUUUUAGUUGCUCAGCGUUU-UUGCUGCCAACUUCAAAACCGCAACUCCGCUUUAUUGUACAUCAAU-----------CAAUAUGUGUGU ..((((((....(((..(((((..(((((...-.))))).)))))..)))...((......))................-----------...)))).)).. ( -13.80) >DroMoj_CAF1 137740 95 + 1 CAACCAUAAUUAUUUUUAGUUGCUCAGCGUUU-UUGCUGCUAACUUCAAAACCGCAACUCCGCUACAUUGUAUGUGCACACACACACACUCAUCAA------ ............(((..(((((..(((((...-.))))).)))))..)))...((......)).....(((.((((....)))).)))........------ ( -13.90) >DroAna_CAF1 91323 88 + 1 UAACCAUAAUUAUUUUUAGUUGCUCAGCGUUU-UUGCUGCCAACUUCAAAACCGCAACUCCGCUUCAUUGUACAUCCA-------------AACAUGUAUUG ............(((..(((((..(((((...-.))))).)))))..)))...((......))......((((((...-------------...)))))).. ( -13.70) >DroPer_CAF1 88486 91 + 1 CAGGCAUAAUUAUUUUUAGUUGCUCAGCGUUUUUUGCUCCCAACUUCAAAACCGCAACUCCGCUUCAUUGUACAUUUAU-----------CAAUACAUGUGA ...((((.....(((..(((((...((((.....))))..)))))..)))...((......))................-----------......)))).. ( -10.40) >consensus UAACCAUAAUUAUUUUUAGUUGCUCAGCGUUU_UUGCUGCCAACUUCAAAACCGCAACUCCGCUUCAUUGUACAUCCAU___________CAAUAUGUGUGA ............(((..(((((..(((((.....))))).)))))..)))...((......))....................................... ( -9.88 = -9.68 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:48 2006