Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,037,808 – 2,037,925 |
Length | 117 |
Max. P | 0.801513 |
Location | 2,037,808 – 2,037,925 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.92 |
Mean single sequence MFE | -21.04 |
Consensus MFE | -12.29 |
Energy contribution | -13.93 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.23 |
Mean z-score | -2.21 |
Structure conservation index | 0.58 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2037808 117 - 20766785 CAAACAUGAUAUUUCGAUUGCCUAAAAAUAGAAAUACUACUUAUAUUUAAUCCUGGUCUUCCGUAGUCACUAAUAAAUAAUCA---UGGUGACUCAAAGAAGCGAAUUCAAGAAUUCGAA .........((((((.(((.......))).)))))).....................((((..(((((((((...........---)))))))).)..))))((((((....)))))).. ( -18.40) >DroSec_CAF1 22934 120 - 1 CAAACUUGAUAUUUCGAUUGCCUAAAAAUAGGAAUACUACUUAUAUUUAUUCCUAGUCUUCCGUAGUCACUAAUAAAUAAUCACCACAGUGACUCAAUGAAGCGAAAUCAAGAAUUCGAA ....((((((..((((............((((((((...........))))))))..((((...(((((((................)))))))....))))))))))))))........ ( -24.29) >DroSim_CAF1 23674 120 - 1 CAAACUUGAUAUUUCGAUUGCCUAAAAAUAGGAAUACUUCUUAUAUUUAUUCCUAGUCUUCCGUAGUCACUAAUAAAUAAUCACCACAGUGACUCAAUGAAGCGAAAUCAAGAAUUCGAA ....((((((..((((............((((((((...........))))))))..((((...(((((((................)))))))....))))))))))))))........ ( -24.29) >DroEre_CAF1 22539 112 - 1 -UAACUUGAUAUAUCGAUUGCCUAAAAAUAGGAAUACUACCUAUAU--AUUCC-CGUCUUCCGCAGUCACCAAUAAAUAAUCG---CGGUGACUCAAA-CAGCGAAAUCAAGAAUUCCAA -...((((((.....((((((...((.(..((((((.........)--)))))-..).))..))))))............(((---(.((.......)-).)))).))))))........ ( -23.50) >DroYak_CAF1 26124 108 - 1 --------AUAUAUUGAAAGCCCAAAAGUAAAAAACCUACCUAUACUAAUUCCUAGUCUUCUGAAGUCACUAAUAAGUAAUCA---UGGUGACUCAAA-ACGUGAAAUCAGGAAUUCCAA --------.......................................(((((((.(..((((((.(((((((...........---))))))))))..-....)))..)))))))).... ( -14.70) >consensus CAAACUUGAUAUUUCGAUUGCCUAAAAAUAGGAAUACUACUUAUAUUUAUUCCUAGUCUUCCGUAGUCACUAAUAAAUAAUCA___CGGUGACUCAAAGAAGCGAAAUCAAGAAUUCGAA ....((((((..((((..............((((.((((..............)))).))))(.(((((((................)))))))).......))))))))))........ (-12.29 = -13.93 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:00 2006