Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,482,064 – 10,482,165 |
Length | 101 |
Max. P | 0.874913 |
Location | 10,482,064 – 10,482,165 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 78.02 |
Mean single sequence MFE | -18.94 |
Consensus MFE | -14.22 |
Energy contribution | -14.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.21 |
Mean z-score | -1.68 |
Structure conservation index | 0.75 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10482064 101 - 20766785 UAUCCUUUUGCAAUUAUUAGCCAUUUUCAAAGUUCAUCUUUCUUGAAAAUUGCCUAUGAAUAAAUAAUGGUCUAAUGGCGGCAGC-----CCAUUCCCAGCCCCAU .......((((..((((((((((((......((((((......(....)......))))))....))))).)))))))..)))).-----................ ( -17.00) >DroSec_CAF1 85417 101 - 1 UAUCCUUUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUUCUUGAGAAUGGCCCAUGAAUAAUAAAUGGUCUAAUGGCAUCAGC-----CCAUUCCCAGCCCCAU .........((..((((..(((((((((((............)))))))))))..))))........(((...((((((....).-----))))).)))))..... ( -21.00) >DroSim_CAF1 85983 101 - 1 UAUCCUUUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUUCUUGAGAAUGGCCCAUGAAUAAUAAAUGGUCUAAUGGCAUCAGC-----CAAUUCCCAGCCCCAU .........((..((((..(((((((((((............)))))))))))..))))........(((.....((((....))-----))....)))))..... ( -22.60) >DroEre_CAF1 83340 106 - 1 GGAUAUAUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUCCUUGAAUACGGCCCAUGCAUAAAUAAUGGUCUAAUGGCGGAACCCCAUCCCAUUCCAAACCCCAU (((................((((((......(((((.......)))))..((.((((.........)))).))))))))(((......)))...)))......... ( -18.90) >DroYak_CAF1 86745 88 - 1 GAAUAUAGUGCACUUAUCAGCCAUU-UCAAAGUUCAUCAUUCUUGACAACGGCCCAUGCAUAAAUAAUGGUCUCAUGGCGGCACCCCAU----------------- .......((((........(((((.-.....(((..(((....))).)))((((.((.........))))))..))))).)))).....----------------- ( -15.20) >consensus UAUCCUUUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUUCUUGAAAAUGGCCCAUGAAUAAAUAAUGGUCUAAUGGCGGCAGC_____CCAUUCCCAGCCCCAU ........(((........(((((((((((.(........).)))))))))))((((.........)))).......))).......................... (-14.22 = -14.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:46 2006