| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,477,234 – 10,477,326 |
| Length | 92 |
| Max. P | 0.680443 |
| Location | 10,477,234 – 10,477,326 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.86 |
| Mean single sequence MFE | -21.21 |
| Consensus MFE | -12.35 |
| Energy contribution | -12.88 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10477234 92 - 20766785 UACUUAAGUACUGAGAUGCCAAGUAAGCGGUGAAAGA-----AGGAGAGGCGAGGAGUAAAAAUAAACUAAUUUGCACACUCGCUUUGGCGUGCUAA ......(((((......(((........)))......-----.(..(((((((((.(((((..........))))).).))))))))..)))))).. ( -21.00) >DroSec_CAF1 80719 92 - 1 UACUUAAGUACUGAGAUGCCAAGUAAGUGGCGAAAGA-----AGGAGAGGCAAGGAGUAAGAAUAAACUAAUUUGCACACUCGCUUUGGCGUGCUAA ..((((.....))))((((((((..((((.(....).-----.......(((((.(((........)))..))))).))))..).)))))))..... ( -23.00) >DroSim_CAF1 81258 92 - 1 UACUUAAGUACUGAGAUGCCAAGUAAGUGGAGAAAGA-----AGGAGAGGCGAGAAGUAAGAGUAAACUAAUUUGCACACUCGCUUUGGCGUGCUAA ......(((((.......(((......))).......-----.(..((((((((..((((.((....))...))))...))))))))..)))))).. ( -19.80) >DroEre_CAF1 78457 92 - 1 UACCUAAGUACUGAGAUGCCAAGUAAGUGGGGAAAGA-----AAAAGAGGCGAGGAGUAAAAAUAAACUAAUUUGCACACUUGCUUUGGCGUGCUAA .............((((((((((((((((........-----.......(((((.(((........)))..))))).))))))).))))))).)).. ( -21.79) >DroWil_CAF1 117688 88 - 1 AA--GAAGUACAGAAAAA--AGAUAAAACAAAAAACAGGGGGGGGAAAGGCAA--AGUA-AAGUGUACUAAUUUGCU--UUGGCUUUUGUUUGCUUU ..--..............--................(((.(((.(((((.(((--((((-((.........))))))--))).))))).))).))). ( -18.30) >DroYak_CAF1 81982 92 - 1 UACCUAAGUACUGAGAUGCCAAGUAAGUGGGGUAAGA-----AAGAGAGGCGAGGAGUAAAAAUAAACUAAUUUCCACACUCGCUUCGGCGUGCUAA ..((((..((((.........))))..))))...((.-----..(.((((((((..((..((((......))))..)).))))))))..)...)).. ( -23.40) >consensus UACUUAAGUACUGAGAUGCCAAGUAAGUGGAGAAAGA_____AGGAGAGGCGAGGAGUAAAAAUAAACUAAUUUGCACACUCGCUUUGGCGUGCUAA ......(((((.......(((......)))................((((((((......((((......)))).....))))))))...))))).. (-12.35 = -12.88 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:42 2006