Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,467,455 – 10,467,545 |
Length | 90 |
Max. P | 0.800376 |
Location | 10,467,455 – 10,467,545 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -21.95 |
Consensus MFE | -12.93 |
Energy contribution | -13.38 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.32 |
Mean z-score | -1.94 |
Structure conservation index | 0.59 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10467455 90 + 20766785 GAUUAUGUUCGAAAUCGGAAUGGGAUGAGAACAGAAUGGAUUACCAGGUCAG--UGAUAGGGGUUUA-AGCCAGAAU-UUUGGUUCGAACUCAG .(((((((((...(((.......)))..)))).((.(((....)))..)).)--))))..(((((..-((((((...-.))))))..))))).. ( -22.90) >DroSec_CAF1 71151 90 + 1 GAUUAUGUUCGAAAUCGGAAUGGGAUGAGAACAGAAUGGAUAACCAGGUCAG--UGAUAGGGGUUUA-AGCCAGAAU-UUUGGUUUGAACUCAG .(((((((((...(((.......)))..)))).((.(((....)))..)).)--))))..(((((((-((((((...-.))))))))))))).. ( -25.60) >DroSim_CAF1 71428 90 + 1 GAUUAUGUUCGAAAUCGGAAUGGGAUGAGAACAGAAUGGAUAACCAGGUCAG--UGAUAGGGGUUUA-AGCCAGAAU-UUUGGUUUGAACUCAG .(((((((((...(((.......)))..)))).((.(((....)))..)).)--))))..(((((((-((((((...-.))))))))))))).. ( -25.60) >DroEre_CAF1 68946 90 + 1 GAUUAUGUUCGAAAUCGGAAUGGGAUGAGAACAGAAUGGAUAACCAGGUCAG--UGAUAUGGGCUUU-AGCCAGAAU-UUUGGUUUGAACUCAG ......((((.((((((((((.((..(((..((..((.(((......))).)--)....))..))).-..))...))-)))))))))))).... ( -20.30) >DroYak_CAF1 72232 91 + 1 GAUUAUGUUCGAAAUCGGAAUGGGAUGAGAACAGAAUGCAUAACCAGGUCAG--UGAUCGGGGUUUUAAGCCAGAAU-UUUGGUUCGAACUCAG ......(((((((.(((((((.((...(((((.(....)....((.((((..--.)))).)))))))...))...))-)))))))))))).... ( -22.30) >DroAna_CAF1 75430 74 + 1 GAGGAGGUGG-----------GGG--------AGGAUAAAGAAUCGGGUCAGAAUAAAAGGAGUUCU-UCAAAGGAUCUCUUGGCCAAACUCUG ..........-----------.((--------(((((.....))).(((((........((((.(((-.....))).)))))))))...)))). ( -15.00) >consensus GAUUAUGUUCGAAAUCGGAAUGGGAUGAGAACAGAAUGGAUAACCAGGUCAG__UGAUAGGGGUUUA_AGCCAGAAU_UUUGGUUCGAACUCAG .....(((((...(((.......)))..)))))((.(((....)))..))..........((((((...((((((...))))))..)))))).. (-12.93 = -13.38 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:39 2006