| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,466,746 – 10,466,842 |
| Length | 96 |
| Max. P | 0.877857 |
| Location | 10,466,746 – 10,466,842 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 76.64 |
| Mean single sequence MFE | -38.78 |
| Consensus MFE | -25.53 |
| Energy contribution | -26.95 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10466746 96 + 20766785 CACUCCCGGCACUGCCGCU------GUGGUGACUAUGAUGGUAGUCCAUCAGCAUGCCCGGCAUGCCCACCGCCAUGGAGGCACUACUCAUGGUGCCCGGUA ....((.(((((((((.((------((((((....((((((....))))))((((((...))))))....)))))))).))))...(....)))))).)).. ( -42.60) >DroVir_CAF1 95909 83 + 1 CGCUGCCAGCGCUGCCGCU------GUGAUGACCAUGAUGAUAGUCCAUUAGCAUGCCGGGGCCGCCGAUGGCCACAGUGGCGCCGA---UA---------- .((.....))((.((((((------((((((....(((((......))))).)))((((.((...))..)))))))))))))))...---..---------- ( -29.00) >DroPse_CAF1 65244 96 + 1 CGCUGCCGGCGCUGCCACUGUGACUGUGGUGGCCAUGAUGGUAGUCAAUCAGCAUGCCAGGCAUGCCCACGGCAAUCGAGGCACUGCCUCCGCCG------A .(((((((((((..((((.......))))..)).(((.((((.....)))).)))))).)))).))...((((....(((((...))))).))))------. ( -42.00) >DroSec_CAF1 70436 96 + 1 CACUUCCAGCACUGCCGCU------GUGGUGACUGCGAUGGUAGUCCAUCAGCAUGCCCGGCAUGCCCACCGCCAUGGAGGCACUGCUCAUGGUGCCCGGUA ((((...((((.((((.((------((((((.....(((((....))))).((((((...))))))....)))))))).)))).))))...))))....... ( -42.40) >DroEre_CAF1 68210 96 + 1 CACUCCCGGCACUGCCACU------GUGGUGACUGUGAUGGUAGUCCAUCAGCAUGCCCGGCAUGCCCACCGCCAUGGAGGCACUGCCCAUGGUGCCCGGUG ((((...((((.((((.((------((((((....((((((....))))))((((((...))))))....)))))))).)))).))))...))))....... ( -43.70) >DroYak_CAF1 71517 96 + 1 CACUCCCGGCACUGCCACU------GUGGUGACUGUGAUGGUAGUCCAUUAGCAUUCCCGGCAUUCCCACCGCCAUGGAGGCACUGCUCAUGGUGCCCGGCA ((((...((((.((((.((------((((((....((((((....))))))((.......))........)))))))).)))).))))...))))....... ( -33.00) >consensus CACUCCCGGCACUGCCACU______GUGGUGACUAUGAUGGUAGUCCAUCAGCAUGCCCGGCAUGCCCACCGCCAUGGAGGCACUGCUCAUGGUGCCCGGUA ((((...((((.((((.((......((((((....((((((....))))))((((((...)))))).))))))...)).)))).))))...))))....... (-25.53 = -26.95 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:38 2006