Locus 3032

Sequence ID 2R_DroMel_CAF1
Location 10,464,385 – 10,464,483
Length 98
Max. P 0.648615
window4996

overview

Window 6

Location 10,464,385 – 10,464,483
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.53
Mean single sequence MFE -28.73
Consensus MFE -20.55
Energy contribution -20.13
Covariance contribution -0.42
Combinations/Pair 1.22
Mean z-score -1.73
Structure conservation index 0.72
SVM decision value 0.24
SVM RNA-class probability 0.648615
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10464385 98 + 20766785
CGUCAGCCAAUCGUGGUAAUGGCAGUGCAUGCUUACGGCAGGCUAGUUUGCCCAUCGGGUAAAUAUC-UUUUCUGCCGCAGGUC-----GCUUAUCAAUUUAAU
.((((((((....))))..))))((((...((((.(((((((..(((((((((...)))))))...)-)..))))))).)))))-----)))............ ( -31.00)
>DroSec_CAF1 68036 98 + 1
CGUCAGCCAGUUGUGGUAAUGGCAGUACAUGCUUACGGCAGGCUAGUUUACCCAUGGGGUUAAUAUC-UUUUCUGCCGCUGGUC-----GCUUAUCAAUUUAAU
.((..((((((....(((..((((.....)))))))((((((..((...((((...))))......)-)..)))))))))))).-----))............. ( -27.40)
>DroSim_CAF1 68989 98 + 1
CGUCAGCCAAUCGUGGUAAUGGCAGUGCAUGCUUACGGCAGGCUAGUUUACCCAUCGGGUAAAUAUC-UUUUUUGCCGCUGGUC-----GCUUAUCAAUUUAAU
.((((((((....))))..))))((((...(((..(((((((..(((((((((...)))))))...)-)..)))))))..))))-----)))............ ( -28.00)
>DroEre_CAF1 65895 98 + 1
CGUCAGCCAAUUGUGUUAAUGGCAGGGCAUGCUUACGGCAGGCUAGUUUGCCCAUCGGGUAAAUAUC-UUUCCUGCCGCUGGUC-----GCUUAUCAAUUUAAU
.....((((..........)))).((((..(((..(((((((..(((((((((...)))))))...)-)..)))))))..))).-----))))........... ( -31.70)
>DroYak_CAF1 69050 84 + 1
CGUCAGCCAAUUG--------------CAUGCUUACGGCAGGCUAGUUUGCCCAUCGGGUAAAUAUC-UUUCCUGCCGCUGGUC-----GCUUAUCAAUUUAAU
............(--------------(..(((..(((((((..(((((((((...)))))))...)-)..)))))))..))).-----))............. ( -25.30)
>DroAna_CAF1 72384 96 + 1
--------AUUUGUGGUAAUUGAAGGACAUGCUUACGGCAGGCCAACUUGCCCAUCGGGUAAAUCUGAUUCCCUGCCGCGGGUCGGUUUGCUUAUCAACCUAAU
--------......(((...(((.((((..(((..(((((((.((..((((((...))))))...))....)))))))..)))..))))..)))...))).... ( -29.00)
>consensus
CGUCAGCCAAUUGUGGUAAUGGCAGUGCAUGCUUACGGCAGGCUAGUUUGCCCAUCGGGUAAAUAUC_UUUCCUGCCGCUGGUC_____GCUUAUCAAUUUAAU
..............................(((..(((((((...((((((((...)))))))).......)))))))..)))..................... (-20.55 = -20.13 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:37 2006