Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,452,962 – 10,453,058 |
Length | 96 |
Max. P | 0.683213 |
Location | 10,452,962 – 10,453,058 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -20.78 |
Energy contribution | -20.08 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.28 |
Mean z-score | -1.20 |
Structure conservation index | 0.68 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10452962 96 + 20766785 UGUGAUAGC------AACAAUGCCAACCAGGAUGUUGUGGACCAGGCCACAACAAGUGCAAUAUACGGCAUUGCGCCCGAAACGACACACAUCUACGGAGUC ((((...((------..(((((((........((((((((......)))))))).(((.....)))))))))).)).((...))...))))((....))... ( -26.70) >DroVir_CAF1 73775 87 + 1 UGUGAUAAC---------------AAUCAGGACGCUGUGGAUCAUGCCACGGCAAGUGCAAUAUAUGGCGUUGCGCCCGAGGCGGCCCACAUCUACGGUGUC ..((((...---------------.)))).((((((((((((..((((.(((...(((((((.......)))))))))).))))......)))))))))))) ( -33.50) >DroPse_CAF1 52446 102 + 1 UGUGAUACCGACCAUACCAAUGCCGAGCAAGAUGUUGUGGAUCAGGCCGCGGCAAGUGCAAUAUACGGCGUUGCGCCGGAGAACGCUCACAUCUACGGUGUC ...(((((((.......((((((((.(((...((((((((......))))))))..)))......)))))))).....(((....))).......))))))) ( -35.00) >DroGri_CAF1 58125 87 + 1 UGUGAUAGC---------------AAUCAGGAUGCUGUGGAUCAUGCCGCAGCAAGUGCAAUAUAUGGUGUUGCCCCAGAGCCGGCACACAUCUAUGGGGUC (.((((...---------------.)))).).((((((((......))))))))...((..((((.(((((((((........)))).)))))))))..)). ( -27.20) >DroMoj_CAF1 80050 84 + 1 UGUGAUAGC---------------AAUCAGGACGCUGUGGAUCA---CACAGCAAGUGCAAUAUAUGGCGUUGCGCCCGAGGCGGCCCACAUUUAUGGUGUC .......((---------------.....((..((((((.....---))))))..(((((((.......)))))))))...))((((((......))).))) ( -26.00) >DroPer_CAF1 58682 102 + 1 UGUGAUACCGACCAUACCAAUGCCGAGCAAGAUGUUGUGGAUCAGGCCGCGGCAAGUGCAAUAUACGGCGUUGCGCCGGAGAACGCUCACAUCUACGGUGUC ...(((((((.......((((((((.(((...((((((((......))))))))..)))......)))))))).....(((....))).......))))))) ( -35.00) >consensus UGUGAUAGC_______________AAUCAGGAUGCUGUGGAUCAGGCCACAGCAAGUGCAAUAUACGGCGUUGCGCCCGAGACGGCACACAUCUACGGUGUC ((((.............................(((((((......)))))))..(((((((.......)))))))...........))))........... (-20.78 = -20.08 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:34 2006