Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,035,502 – 2,035,592 |
Length | 90 |
Max. P | 0.969009 |
Location | 2,035,502 – 2,035,592 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 81.33 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -23.72 |
Energy contribution | -24.44 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.11 |
Mean z-score | -2.19 |
Structure conservation index | 0.85 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.969009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2035502 90 + 20766785 UUAAAGUCUGUGCCGCAGUCAACAAAGUUGGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAG---------------------- .....((.(.(((((((((((((...((((((((.....)))).((((......))))))))..)))))))....)))))).).))....---------------------- ( -30.00) >DroSec_CAF1 20613 90 + 1 UUAAAGUCUGUGCCGCAGUCAACAAAGUUUGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAG---------------------- .....((.(.((((((.(((((.......(((((.....))))))))))((((.(((((.....)))))..)))))))))).).))....---------------------- ( -28.31) >DroSim_CAF1 20836 112 + 1 UUAAAGUCUGUGCCGCAGUCAACAAAGUUGGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAGAUACACAGAUACGCAGAUACUC .....((((((((((((((((((...((((((((.....)))).((((......))))))))..)))))))....))))).(.....)..............)))))).... ( -31.10) >DroEre_CAF1 20239 112 + 1 UUAAAGUUUGCGCCGCAGUCAGCAAAGUUGGUUGUAGAGCGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCUGCAGAUACACAGAUGCGCAGAUACACAGAUACUC .....((((((((.(.(((((((...((((((((.....)))).((((......))))))))..))))))).)...(((........)))..))))))))............ ( -28.90) >DroYak_CAF1 23687 107 + 1 UUAAAGUUUGUGCCGCAGUCAACAAAGUUGGCCGAAGAACGACAUUG-----ACUCAACAACAAGUUGACUUCAAGCUGCAGAUACACAGAUACACAGAUACUUAGAUACUC .....((((((((.(((((.......((((.........)))).(((-----(.(((((.....)))))..))))))))).)...))))))).................... ( -20.60) >consensus UUAAAGUCUGUGCCGCAGUCAACAAAGUUGGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAGAU_C_CAGAUAC__AGAUACUC .....((.(.(((((((((((((...((((((((.....)))).((((......))))))))..)))))))....)))))).).)).......................... (-23.72 = -24.44 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:59 2006