Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,452,249 – 10,452,369 |
Length | 120 |
Max. P | 0.585110 |
Location | 10,452,249 – 10,452,369 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -46.06 |
Consensus MFE | -21.57 |
Energy contribution | -22.47 |
Covariance contribution | 0.90 |
Combinations/Pair | 1.46 |
Mean z-score | -2.30 |
Structure conservation index | 0.47 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10452249 120 - 20766785 CACUUAGCACACUCAACUGCUGACAGCUGCACAGCUCAUCUGGUAGUUGUCGUAGUUGAUUAUCAUCGGCGAACAGAAAGCGAAGGCUACGCAACAUCCCAAUUGUGCUAGGUAGGCGUA .((((((((((.((((((((.(((((((((.(((.....))))))))))))))))))))........((.((......(((....)))........))))...))))))))))....... ( -46.14) >DroVir_CAF1 73014 120 - 1 CGCUUAAGACACUCAAUUGACUGCAGCUGCAGAGCUCGUCGGGCAGCUGGCGCAGCUGAUUGUCGUCGGCGAAGAGGAAGCGCAGUUUGACCAGCGAUCCAAUUGUGCUGGGAAGGCGCA ((((...((((.((......((((....))))((((((((((....)))))).)))))).))))...))))........((((.......((((((.........))))))....)))). ( -45.20) >DroPse_CAF1 51733 120 - 1 UACUCAAGACACUCAGCUGCUGGCAGCUGCAAAGCUCGUCGGGCAGCUGGCGGAGCUGAUUCUCAUCGGCGAAGAGAAACCGCAGACUUCGCAGCAUUCCAAUGGUGCUGGGCAGGCGGA ..(((....(.(.(((((((((((((((....)))).))).))))))))).)..((((((....))))))...)))...((((...((.(.(((((((.....))))))).).)))))). ( -48.70) >DroWil_CAF1 85792 120 - 1 CACUCAGUACACUCAGCUGCUGGCAACUGCACAGCUCAUCGGGCAAUUGACGCAGCUGAUUAUCGUCCGCGAAGAGAAACCUCAAGCGUUUCAGCAUUCCAAUGGUGCUGGGCAGACGCA ..(((.......((((((((((((....)).))(((.....))).......))))))))...(((....))).))).........(((((((((((((.....))))))))...))))). ( -39.70) >DroAna_CAF1 59938 120 - 1 CGCUCAGCACGCUUAGCUGCUGACAGCUGCACAGUUCAUCGGGCAACUGACGCAACUGAUUGUCAUCGGCAAAUAGAAAUCGCAGACUGCGCAGCAUUCCAAUCGUGCUGGGCAGGCGAA .((((((((((....(((((.(.(((((((.((((((.((((....)))).).))))).((((.....)))).........)))).)))))))))........))))))))))....... ( -50.40) >DroPer_CAF1 57959 120 - 1 UACUCAAGACACUCAGCUGCUGGCAGCUGCAAAGCUCGUCGGGCAACUGGCGGAGCUGAUUCUCAUCGGCGAAGAGAAACCGCAGACUUCGCAGCAUUCCAAUGGUGCUGGGCAGGCGGA ..(((........((((((....))))))......(((((((....))))))).((((((....))))))...)))...((((...((.(.(((((((.....))))))).).)))))). ( -46.20) >consensus CACUCAAGACACUCAGCUGCUGGCAGCUGCACAGCUCAUCGGGCAACUGGCGCAGCUGAUUAUCAUCGGCGAAGAGAAACCGCAGACUUCGCAGCAUUCCAAUGGUGCUGGGCAGGCGCA ..(((.......((((.((((.(.((((....))))...).)))).))))....((((((....))))))...)))...((((...((.(.((((((.......)))))).).)))))). (-21.57 = -22.47 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:33 2006