Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,448,653 – 10,448,743 |
Length | 90 |
Max. P | 0.885665 |
Location | 10,448,653 – 10,448,743 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 67.87 |
Mean single sequence MFE | -20.80 |
Consensus MFE | -5.36 |
Energy contribution | -5.87 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.29 |
Mean z-score | -2.38 |
Structure conservation index | 0.26 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10448653 90 + 20766785 GAAGCCAAGGGUUCCAAGAAGGGCAAAGGCAAAAAGAAGUAAGUUCCCCAACUAGUUUGGUGGAACUAACUUA---AAAAGAGGAAUUCAAUG- ........(((((((.......((....))......((((.((((((((((.....)))).)))))).)))).---......)))))))....- ( -25.50) >DroPse_CAF1 47816 70 + 1 CAGUCGAAGGGCUCUAAGAAGGGCAAGGGCACGAAGAAGUAGUGGU-GUUCAAAU----------------CA------AAAUUAAUCAAAAU- .....((...(((((....)))))..((((((.(........).))-))))...)----------------).------..............- ( -12.50) >DroSec_CAF1 52750 90 + 1 GAAGCCAAGGGCUCCAAGAAGGGCAAAGGCAAAAAGAAGUAAGUUCCCCAGCUAGUUUGGUGGAACUAACUUA---AAAAGAGGAAUUCAAUG- ((((((....((((......))))...)))......((((.((((((((((.....)))).)))))).)))).---..........)))....- ( -25.70) >DroSim_CAF1 51354 90 + 1 GAAGCCAAGGGUUCCAAGAAGGGCAAGGGCAAAAAGAAGUAAGUUCCCCAACUAGUUUGGUGGAACUAACUUA---AAAAGAGGAAUUAAAUG- ...(((....((((......))))...)))......((((.((((((((((.....)))).)))))).)))).---.................- ( -23.60) >DroEre_CAF1 50395 93 + 1 GAAGCCAAGGGCACCAAGAAGGGCAAAGGCAAGAAGAAGUAACGUUCCUAGCUGGUUUGGUGGCACUAACGUGACUAAAAAAGGAAUUACAAG- ...(((....((.((.....))))...)))........(((..((((((......((((((.((......)).))))))..)))))))))...- ( -22.30) >DroAna_CAF1 56861 84 + 1 GAGGCUAAGGGCAGCAAGAAGGGCAAGGGCAAAAAGAAGUAAUAUGUGAUAAUAUUUUU-------CAACCUC---GAUACCGAAAUCGGAUGC ((((((....((..(.....).))...))).....((((.(((((......))))))))-------)...)))---....(((....))).... ( -15.20) >consensus GAAGCCAAGGGCUCCAAGAAGGGCAAAGGCAAAAAGAAGUAAGUUCCCCAACUAGUUUGGUGGAACUAACUUA___AAAAGAGGAAUUAAAUG_ ...(((....((((......))))...)))................................................................ ( -5.36 = -5.87 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:32 2006