| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,442,823 – 10,442,918 |
| Length | 95 |
| Max. P | 0.846786 |
| Location | 10,442,823 – 10,442,918 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 89.40 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -19.86 |
| Energy contribution | -20.28 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10442823 95 - 20766785 AUGCGACAAAUUAUCCCGCUUCGGGUAUUUUGUUCGUU---CAUUAAAAAAAAAAAAACGUUUUGUCGCUUGUAAUUGAGCGGCAGUUGCUUUUGUUU ..((((((((.(((((......))))).)))).)))).---..................((.(((((((((......)))))))))..))........ ( -23.70) >DroSec_CAF1 46885 95 - 1 AUGCGACAAAUUAUACCGCUUCGGGUAUUUUGUUCGUU---CAAUUAAAAAAAAAAAACGUUUUGUCGCUUGUAAUUGAGCGGCAGUUGCUUUUGUUU ..((((((((..(((((......))))))))).)))).---..................((.(((((((((......)))))))))..))........ ( -22.20) >DroSim_CAF1 45433 95 - 1 AUGCGACAAAUUAUACCGCUUCGGGUAUUUUGUUCGUU---CAUUAAAAAAAAAAAAACGUUUUGUCGCUUGUAAUUGAGCGGCAGUUGCUUUUGUUU ..((((((((..(((((......))))))))).)))).---..................((.(((((((((......)))))))))..))........ ( -22.20) >DroEre_CAF1 44551 90 - 1 AUGCGACAAAUUAUCCCGCUUCGGGUAUUUUGUUCGUU---CAUUAAA-----AAAAACGUUUUGUCGCUUGUAAUUGAGCGGCAGUUGCUUUUGUUU ..((((((((.(((((......))))).)))).)))).---.......-----......((.(((((((((......)))))))))..))........ ( -23.70) >DroYak_CAF1 46888 89 - 1 AUGCGACAAAUUAUCCCGCUUCGGGUAUUUUGUUCGUU---CAUUAAA------AAAACGUUUUGUCGCUUGUAAUUGAGCGGCAGUUGCUUUUGUUU ..((((((((.(((((......))))).)))).)))).---.......------.....((.(((((((((......)))))))))..))........ ( -23.70) >DroAna_CAF1 51367 89 - 1 AUGCGAAAAAUUAUCCGGCUUCGGGUGUUUUUUGCUGUGACCAUUA---------AAACGUUUUGUCGCUUGUAAUUGUGCGGCAGCUGCUUUUAUUU ..(((((((((.(((((....)))))))))))))).........((---------(((.((.(((((((..........)))))))..)))))))... ( -24.00) >consensus AUGCGACAAAUUAUCCCGCUUCGGGUAUUUUGUUCGUU___CAUUAAA_____AAAAACGUUUUGUCGCUUGUAAUUGAGCGGCAGUUGCUUUUGUUU ..((((((((.(((((......))))).))))).)))......................((.(((((((((......)))))))))..))........ (-19.86 = -20.28 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:31 2006