| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,440,726 – 10,440,821 |
| Length | 95 |
| Max. P | 0.908203 |
| Location | 10,440,726 – 10,440,821 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.05 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -7.43 |
| Energy contribution | -9.44 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.28 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10440726 95 + 20766785 AACGCGUCUU---G-CUCGGUCUGCACUCUACAGUCUACAGUCUGCAGGCUACGGG--------------CU-------ACAAUCUUCAACAAUCUUCGCUGCCUGCAGGCCUCUUCCCA ...((.....---)-)..((.(((.......))).))...((((((((((..((((--------------..-------................))))..))))))))))......... ( -23.77) >DroSec_CAF1 44836 95 + 1 ACUGCGUCUU---G-CUCGGUUUGCACUCUACAAUCUGCAGUCUGCAGUCUGCAGG--------------CU-------ACAAUCUUCAACAAUCUUCGCUGCCUGCAGGCCUCUUCCCA ((((((..((---(-...(((....)))...)))..)))))).....(((((((((--------------(.-------......................))))))))))......... ( -25.80) >DroSim_CAF1 43366 95 + 1 ACUGCGUCUU---G-CUCGGUUUGCAGUCUACAAUCUGCAGUCUGCAGUCUGCAGG--------------CU-------ACAAUAUUCAACAAUCUUCGCUGCCUGCAGGCCUCUUCCCA ((((.(....---.-).)))).(((((.((.(.....).)).)))))(((((((((--------------(.-------......................))))))))))......... ( -28.10) >DroYak_CAF1 44669 116 + 1 ACUGCGUCUU---G-CUCUGCCUGCACUCUACAGCCUGCACUCUGCAGUCUACAGGCUACAGCCUUCAGGCUACAGUCUACAAUCUUGAACAAUCUUCGCUGCCUGCUGGUCUCUUCCCA ...((.....---)-)...(((.(((.....((((((((.....)))).....(((((..((((....))))..)))))...................))))..))).)))......... ( -26.00) >DroAna_CAF1 49583 82 + 1 GAA--GUCUUUUUGCCUUUGUCUG--------------GAGUCUGCAAUCUUCAGG--------------CU-------UGAGGCUUCGGGACUUCGAGCUGCG-GCCUACCUCUUCCCA (((--(((((...(((((.(((((--------------(((........)))))))--------------).-------.)))))...))))))))..((....-))............. ( -30.00) >consensus ACUGCGUCUU___G_CUCGGUCUGCACUCUACAAUCUGCAGUCUGCAGUCUACAGG______________CU_______ACAAUCUUCAACAAUCUUCGCUGCCUGCAGGCCUCUUCCCA ..................((((((((........(((((((........)))))))..................................((........))..))))))))........ ( -7.43 = -9.44 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:30 2006