Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,435,624 – 10,435,720 |
Length | 96 |
Max. P | 0.923976 |
Location | 10,435,624 – 10,435,720 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -33.68 |
Consensus MFE | -23.34 |
Energy contribution | -23.03 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -2.02 |
Structure conservation index | 0.69 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10435624 96 - 20766785 GGCCAGUCCACUUGGCCCCCUUCCCCG-CCCCCCUCGUGGACGAUCC----------------------GAUCUGCGAUCGGUGAUCGCCGUCAUGGCUAUAACAUGCUAUAUCAUAAU (((..((((((..(((..........)-))......))))))(((((----------------------((((...))))))..))))))(..(((((........)))))..)..... ( -28.80) >DroSec_CAF1 39712 96 - 1 GGCCAGUCCACUUGGCCCCCUUCCCCG-CCCCCCUCGCGGACGAUCC----------------------GAUCUGCGAUCGGUGAUCGCCGUCAUGGCUAUAACAUGCUAUAUCAUAAU ((((((.....))))))..........-........((((.((((((----------------------((((...))))))..)))))))).(((((........)))))........ ( -28.90) >DroEre_CAF1 37295 115 - 1 GGCCGGGCCACUUGGCCCCAUCCCCGC----CCCCCGUGGACCACCCCAUCCGCGAUCUGCGGAUCUGCGAUCUGCGAUCGGUGAUCGCCGUCAUGGCUAUAACAUGCUAUAUCAUAAU (((.(((((....)))))......(((----(....(((((........)))))((((.(((((((...)))))))))))))))...)))(..(((((........)))))..)..... ( -45.20) >DroYak_CAF1 39515 111 - 1 GGCCAGGCCAACUGGCCCCAUUCCCCCACUUCCCCCGUGAACGACCCCAUCUGCGAUC--------UGUGAUCUGCGAUCGGUGAUCGCCGUCAUGGCUAUAACAUGCUAUAUCAUAAU ((((((.....))))))...................((((..(((.......((((((--------..(((((...)))))..)))))).)))(((((........))))).))))... ( -31.80) >consensus GGCCAGGCCACUUGGCCCCAUUCCCCC_CCCCCCCCGUGGACGACCC______________________GAUCUGCGAUCGGUGAUCGCCGUCAUGGCUAUAACAUGCUAUAUCAUAAU ((((((.....))))))...................((((.............................(((..((((((...)))))).)))(((((........))))).))))... (-23.34 = -23.03 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:27 2006