| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,425,626 – 10,425,716 |
| Length | 90 |
| Max. P | 0.522093 |
| Location | 10,425,626 – 10,425,716 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 70.65 |
| Mean single sequence MFE | -15.30 |
| Consensus MFE | -8.27 |
| Energy contribution | -10.15 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10425626 90 + 20766785 UGCGAUUUCGAAAAUGGAAUGGAAUGGUAUGACCACUCA---CUAAUUUUGAAAUCCCCAUCGCUCAAUAUUAAUAACACUCUUAUAA-UGAAA ...((((((((((.(((....((.(((.....))).)).---))).))))))))))................................-..... ( -14.90) >DroSec_CAF1 29935 76 + 1 UGCGAUUUCGAAAAUGGAAUGGAAUGGAAUGACCACUCCUCACUAAUUUUGAGAUCCCCAUCGCUCAAUAUUAAUA------------------ ...((((((((((.(((...(((.(((.....))).)))...))).))))))))))....................------------------ ( -18.40) >DroSim_CAF1 29261 73 + 1 UGCGCUUUCCAAAAAGGAACGGAAUGGAAUGACCACUCC---CUAAUUUUGAGAUCCCCAUCGCUCAAUAUUAAUA------------------ ......((((.....)))).(((.(((.....))).)))---.((((.(((((..........))))).))))...------------------ ( -13.20) >DroYak_CAF1 29659 85 + 1 UACGAUUUUAAAGA------GGAAAGGAAUAAGCACUCA---CUAAUUUUGGGUUCCCCAUCGCCCAAUAUCAAUAUCACUUUCUUUAGUUCAA ............((------((((((..(((((......---))....((((((........))))))......)))..))))))))....... ( -14.70) >consensus UGCGAUUUCGAAAAUGGAAUGGAAUGGAAUGACCACUCA___CUAAUUUUGAGAUCCCCAUCGCUCAAUAUUAAUA__________________ ...((((((((((.(((...(((.(((.....))).)))...))).))))))))))...................................... ( -8.27 = -10.15 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:25 2006