| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,421,723 – 10,421,815 |
| Length | 92 |
| Max. P | 0.960863 |
| Location | 10,421,723 – 10,421,815 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 75.33 |
| Mean single sequence MFE | -20.41 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.48 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10421723 92 - 20766785 UAAUUAGUUGGGCCAUAAAAACUGAUUUAUUAUGGCCCGGUCAAUGCUACACAGCGUCACGCGCAG--CC--CCC----C-GCCUACCAACUCCCUACAUU .....(((((((((((((.((.....)).)))))))))(((..(((((....)))))...(((...--..--...----)-))..)))))))......... ( -22.70) >DroVir_CAF1 34297 87 - 1 UAAUUUUCUGGCUCAUAAAAACUGAUUAAUUAUGGCCCGGUCAAUGCUACCAAAC---ACGCGACUUGCG--UCUCUU-CGGCCAGC------CCGACA-- ......((.((((((.......))).......(((((.(((.......)))....---((((.....)))--).....-.)))))))------).))..-- ( -19.00) >DroSec_CAF1 26087 98 - 1 UAAUUAGUUGGGUCAUAAAAACUGAUUUAUUAUGGCCAGGUCAAUGCUACCCAGCGUCACGCGCAG--CAAACCCCUUCC-CCCUGCCAACUCCCUACAUU .....(((((((((((((.((.....)).)))))))).(((...((((.....(((.....)))))--)).)))......-......)))))......... ( -20.20) >DroSim_CAF1 25425 96 - 1 UAAUUAGUUGGGCCAUAAAAACUGAUUUAUUAUGGCCCGGUCAAUGCUACCCAACGUCACGCGCAG--CC--CCCCCUAC-CCCUACCAACUCCCUACAUU .....(((((((((((((.((.....)).)))))))))(((...(((...............))))--))--........-.......))))......... ( -17.76) >DroEre_CAF1 24122 86 - 1 UAAUUAGUUGGGCCAUAAAAUAUGAUUAAUUAUGGCCCGGUCAAUGCUACCCAGCGUCACGCGCUG--CC--CCUCCAUC-GCCC----------UCCAUU .........(((((((((...........)))))))))((.(.(((.....(((((.....)))))--..--....))).-).))----------...... ( -24.10) >DroAna_CAF1 30570 83 - 1 UAAUUAGUUGGGCCAUAAAAACUGAUUAAUUAUGGCUCGGUCAAUGCUACCAAACGUCACGCGCCG--AC--CGCCC--C-GCU-----------UUCCUU .....(((.(((((((((...........))))))).(((((..(((.............)))..)--))--)).))--.-)))-----------...... ( -18.72) >consensus UAAUUAGUUGGGCCAUAAAAACUGAUUAAUUAUGGCCCGGUCAAUGCUACCCAACGUCACGCGCAG__CC__CCCCCU_C_GCCU_C______CCUACAUU ..(((..(((((((((((...........)))))))))))..)))........................................................ (-13.65 = -13.48 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:24 2006