Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,028,632 – 2,028,733 |
Length | 101 |
Max. P | 0.604665 |
Location | 2,028,632 – 2,028,733 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -22.05 |
Energy contribution | -22.47 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.19 |
Mean z-score | -1.59 |
Structure conservation index | 0.67 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2028632 101 - 20766785 ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGUGAGUGCAUGCACUAGCACGGGUAUCUGCAAGUACGCGUAUCUGUAGUAUCUGUAUCUUU .....(((((((((((.......((((.......))))...)))))))))))......(((((((.(((((..((....))..))))))))))))...... ( -34.50) >DroSec_CAF1 14199 101 - 1 ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGCGAGUGCAUGCACUAGUACGGGUAUCUGCCAGUACGCGUAUCUGUGGUAUCUGUAUCUUU .....((((((((((..((((..((((.......))))))))))))))))))....(((((((((((...(((((....)).))).))))))))))).... ( -33.40) >DroSim_CAF1 14106 101 - 1 ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGCGAGUGCAUGCACUAGUACGGGUAUCUGCCAGUACGCGUAUCUGUGGUAUCUGUAUCUUU .....((((((((((..((((..((((.......))))))))))))))))))....(((((((((((...(((((....)).))).))))))))))).... ( -33.40) >DroEre_CAF1 13663 92 - 1 ACACAGCGUGCACUUAAGUGUCGUCGCUGCGCCUGUGAAUGCGAGUGCAUGCGCGCGUACGGGUAUCUGCAAGUUCGCGUAU---------CUGUAUCUUC .....(((((((....((((....))))((((.(((....))).)))).)))))))((((((((((..((......))))))---------)))))).... ( -32.20) >DroYak_CAF1 17291 92 - 1 ACACAGCGUGCACUUAAGUGUCGUCGCUCUGCCUGUGAAUGCGAGUGCAUGUGCGCGUACGGGUAUCUGCAAGUACGCGUAU---------CUGUAUCUUC ..(((((((((((((..((((..((((.......)))))))))))))))))(((((((((..((....))..))))))))).---------))))...... ( -34.30) >DroAna_CAF1 14109 86 - 1 GCACAGCGUGCAUUUAAGUGUCGUCGCUCCGCCAG------CGAGUGCAUGU--------GUGGAUCCGCAAGUACGUGUAUCUGUG-CAUCCGCAAACUU ((((..((.((((....))))))(((((.....))------)))))))...(--------((((((.((((..((....))..))))-.)))))))..... ( -29.10) >consensus ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGCGAGUGCAUGCACUAGUACGGGUAUCUGCAAGUACGCGUAUCUGUG_UAUCUGUAUCUUU ((...((((((((((.((((....))))..((........))))))))))))....(((((.((((......)))).)))))...........))...... (-22.05 = -22.47 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:58 2006