Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,418,478 – 10,418,580 |
Length | 102 |
Max. P | 0.798661 |
Location | 10,418,478 – 10,418,580 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -21.59 |
Energy contribution | -21.82 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.26 |
Mean z-score | -1.31 |
Structure conservation index | 0.66 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10418478 102 + 20766785 AAAUCCU----AAACCCACGUUACUAGCAGAGCCGAGCAUCCGCUGACCAGCAGCGGAUAGCACGUGAAACUGCUCAGGCUGGAAAACAUUGGCAGCACCAUGCGA .......----....(((.(((...(((((..(((.((((((((((.....)))))))).)).)).)...)))))..)))))).........(((......))).. ( -31.50) >DroVir_CAF1 30346 100 + 1 U----CUGA-AGGACGCACGUUAGCAACAGCGCUGAGCAGCCGCUGACCACCAGUGGGUAGCAGGUGAAGCUGCUCAGGCCGGAAAACAUCGAGAACACCAUGG-A (----(((.-.....((......))....((.(((((((((((((..(.(((....))).)..))))..)))))))))))))))....................-. ( -30.70) >DroPse_CAF1 20584 105 + 1 AAAGCCAGA-AAGACCCACGUUAGAACCAGGGCCGAGCACCCGCUGACCAGCAGCGGGUAGCACGUGAAGCUGCUCAGGCUGGAGAACAUUGGCAAAACCAUUCGG ...(((((.-..(((....)))....(((..(((((((((((((((.....))))))))(((.......))))))).))))))......)))))............ ( -37.10) >DroGri_CAF1 17694 102 + 1 U----AUUAUAGAACCCACGUUAGCAGGAGCGCUGAACAGCCGCUGACCACCAGUGGGUAGCAGGUGAAGCUGCUCAGGCCGGAAAACAUCGAGAACACCAUCGAG .----...............(..((..(((((((.....(((((((.(((....))).)))).)))..))).))))..))..)......((((........)))). ( -29.00) >DroAna_CAF1 26710 98 + 1 GGG--------CAACCCACGUUAGCAGCAAAGCCGAGCAUCCACUGACCAGCAGUGGAUAGCACGUGAAACUGCUCAGGCUGGAAAACAUUGGCACCACCAUGCGG ((.--------...))(((((..((......))...((((((((((.....)))))))).)))))))...((((...((.(((............)))))..)))) ( -31.40) >DroPer_CAF1 26670 105 + 1 AAAGCCAGA-AAGACCCACGUUAGCACCAGGGCCGAGCACCCGCUGACCAGCAGCGGGUAGCACGUGAAGCUGCUCAGGCUGGAGAACAUUGGCAAAACCAUUCGG ...(((((.-..(((....)))....(((..(((((((((((((((.....))))))))(((.......))))))).))))))......)))))............ ( -37.10) >consensus AAA__CUGA_AAAACCCACGUUAGCAGCAGAGCCGAGCACCCGCUGACCAGCAGCGGGUAGCACGUGAAGCUGCUCAGGCUGGAAAACAUUGGCAACACCAUGCGG ..............................((((((((((((((((.....))))))))(((.......))))))).))))......................... (-21.59 = -21.82 + 0.22)
Location | 10,418,478 – 10,418,580 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -36.97 |
Consensus MFE | -25.24 |
Energy contribution | -25.02 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.29 |
Mean z-score | -1.48 |
Structure conservation index | 0.68 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10418478 102 - 20766785 UCGCAUGGUGCUGCCAAUGUUUUCCAGCCUGAGCAGUUUCACGUGCUAUCCGCUGCUGGUCAGCGGAUGCUCGGCUCUGCUAGUAACGUGGGUUU----AGGAUUU ..((((((.....)).))))..((((((((.(((((.....((.((.((((((((.....)))))))))).))...)))))........))))).----.)))... ( -33.60) >DroVir_CAF1 30346 100 - 1 U-CCAUGGUGUUCUCGAUGUUUUCCGGCCUGAGCAGCUUCACCUGCUACCCACUGGUGGUCAGCGGCUGCUCAGCGCUGUUGCUAACGUGCGUCCU-UCAG----A .-.............(((((....((((((((((((((....((((((((....))))).))).)))))))))).))))..((....)))))))..-....----. ( -37.40) >DroPse_CAF1 20584 105 - 1 CCGAAUGGUUUUGCCAAUGUUCUCCAGCCUGAGCAGCUUCACGUGCUACCCGCUGCUGGUCAGCGGGUGCUCGGCCCUGGUUCUAACGUGGGUCUU-UCUGGCUUU .....(((.....))).........((((.(((((((.......)))((((((((.....))))))))))))(((((((.......)).)))))..-...)))).. ( -39.10) >DroGri_CAF1 17694 102 - 1 CUCGAUGGUGUUCUCGAUGUUUUCCGGCCUGAGCAGCUUCACCUGCUACCCACUGGUGGUCAGCGGCUGUUCAGCGCUCCUGCUAACGUGGGUUCUAUAAU----A .((((........))))........(((((((((((((....((((((((....))))).))).)))))))))).)))((..(....)..)).........----. ( -36.20) >DroAna_CAF1 26710 98 - 1 CCGCAUGGUGGUGCCAAUGUUUUCCAGCCUGAGCAGUUUCACGUGCUAUCCACUGCUGGUCAGUGGAUGCUCGGCUUUGCUGCUAACGUGGGUUG--------CCC ..((((((.....)).))))....((((((.((((((....((.((.((((((((.....)))))))))).)).....)))))).....))))))--------... ( -35.80) >DroPer_CAF1 26670 105 - 1 CCGAAUGGUUUUGCCAAUGUUCUCCAGCCUGAGCAGCUUCACGUGCUACCCGCUGCUGGUCAGCGGGUGCUCGGCCCUGGUGCUAACGUGGGUCUU-UCUGGCUUU .....(((.....))).........((((.(((((((.......)))((((((((.....))))))))))))(((((..((....))..)))))..-...)))).. ( -39.70) >consensus CCGCAUGGUGUUGCCAAUGUUUUCCAGCCUGAGCAGCUUCACGUGCUACCCACUGCUGGUCAGCGGAUGCUCGGCCCUGCUGCUAACGUGGGUCUU_UCAG__UUU ............(((.(((((...(((.(((((((((.......)))((((((((.....))))))))))))))..))).....))))).)))............. (-25.24 = -25.02 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:22 2006