| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,412,687 – 10,412,795 |
| Length | 108 |
| Max. P | 0.589611 |
| Location | 10,412,687 – 10,412,795 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.10 |
| Mean single sequence MFE | -28.51 |
| Consensus MFE | -11.44 |
| Energy contribution | -12.26 |
| Covariance contribution | 0.82 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10412687 108 - 20766785 CAACCGUGAGUAAGCAGACUUGCAAAAAAAUUAUUGAUAAGUGUA---UACUUUUAGCACUAGGCACUGU--------ACAGUUCGUCACUGUACAGUACUUCUUCAUUAUUCAUCAC-C .....(((((((((....)))))........((.(((..(((((.---........)))))(((.(((((--------(((((.....)))))))))).)))..))).))....))))-. ( -26.20) >DroSec_CAF1 17133 115 - 1 CAACCGCGAGUAAGCAGACUUGCAAA-CGUUUAUUGAUAAGGGAA---UACCUUCAGCACUAGACGUUGUGAUAAGUCAUUGUGCGUCACUGUACAGUACUUAUUCAUUGUGCUUCAC-C .......(((((((..((((((((((-((((((.((..((((...---..))))...)).)))))))).)).))))))((((((((....)))))))).)))))))............-. ( -34.30) >DroSim_CAF1 16484 116 - 1 CAGCCGUGAGUAAGCAGACUUGCAAA-CGUUUAUUGAUAAGGGAA---UACCUUUAGCACUAGACGUUGUGAUAAGUCACAGUGCGUCACUGUACAGUACUUAUCCAUUAUGCUUGGUAU .(((.(((..((((..((((((((((-((((((.((.((((((..---..)))))).)).)))))))).)).))))))((((((...))))))......))))..)))...)))...... ( -34.50) >DroEre_CAF1 14981 106 - 1 ---------UUAAUUUGAAUUGCAAA-CGUUUAUUGAUAAGGGGAUGAUACCCUAAGCCCCAGAC--UGCGAUAAGUCACAGUGCGUCACUGUACAGUACUAACUCACUAUUUUU-UC-C ---------.................-.((((((((....((((..(.....)....)))).(((--(......))))((((((...)))))).)))))..)))...........-..-. ( -19.40) >DroYak_CAF1 16564 115 - 1 UAACCGUGAGUAAGCAGACUUGCAAA-UGUUUACUGAUAAGGGGA---UACCCUAAACCCCAGACCUUGUGAUAAGUCACAGUGCGUCACUGUAGAGCACUAACUCUCGAUUUUUGAC-C ....((.((((.....((((((((..-.((((.......((((..---..)))).......))))....)).))))))..(((((.((......))))))).)))).)).........-. ( -28.14) >consensus CAACCGUGAGUAAGCAGACUUGCAAA_CGUUUAUUGAUAAGGGAA___UACCUUAAGCACUAGACGUUGUGAUAAGUCACAGUGCGUCACUGUACAGUACUUAUUCAUUAUUCUUCAC_C .....((((((......))))))........(((((...((((.......))))........(((.((((((....))))))...)))......)))))..................... (-11.44 = -12.26 + 0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:16 2006