Locus 3015

Sequence ID 2R_DroMel_CAF1
Location 10,402,790 – 10,402,909
Length 119
Max. P 0.500000
window4973

overview

Window 3

Location 10,402,790 – 10,402,909
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 82.41
Mean single sequence MFE -36.11
Consensus MFE -25.20
Energy contribution -25.87
Covariance contribution 0.67
Combinations/Pair 1.25
Mean z-score -1.38
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10402790 119 + 20766785
AAAGUUUUGGUCAUGUUGCUCUAUGACCUCCUCCACCUCAGCCCGAACCUUAUCUUGAAUGUCCGGAUUCUUUGCCAGUUCGUAUAGGGCAAAUCCCAUGGUGGAGGAGGAUGUCUCAA
..........(((((......)))))(((((((((((......(((((........((((......)))).......)))))....(((.....)))..)))))))))))......... ( -35.56)
>DroPse_CAF1 13264 119 + 1
GAAUUUCUGUUCGUGCUGCUCCAGGACUUCCUCCACCUCAGCCCUAACUUUGUCUUGUAUGUGCGGCUGCUUGGCCAGUUCAUACAGAGCAUAUCCCAUGGUGGAGGAGGAAGUCUCGA
((((....)))).........(..((((((((((.((...(((.......((..(((((((.((((((....)))).)).)))))))..))........))))).))))))))))..). ( -43.36)
>DroSim_CAF1 15135 119 + 1
AAAGUUCUGGUCAUGUUGCUCCAUGACCUCCUCCACCUCAGCCCGAACCUUAUCUUGAAUGUGCGGAUUCUUUGCCAGCUCGUACAGGGCAAAUCCCAUGGUGGAGGAGGAUGUCUCAA
...((((.(((((((......)))))))(((((((((...((((((......)).....((((((..((.......))..)))))))))).........)))))))))))))....... ( -40.60)
>DroWil_CAF1 26082 119 + 1
AAACUGUUGAUUGUGUUUUUCGAAUACCUCUUCCACCUCAGCUCUCAGUUUGUCCUGAAUGUGUGGAUUCUUAGCCAAUUCGUAGAGAGCAAAACCCAUGGUGGACGAAGAAGUCUCAA
...............(((((((..((((...(((((....((..((((......))))..)))))))(((((.((......)).)))))..........))))..)))))))....... ( -24.10)
>DroYak_CAF1 15215 119 + 1
AAAGUUUUGGCCGUGUUGCUCCAUGACCUCCUCCACCUCAGCCCUAACCUUAUCUUGGAUGUGUGGAUUCCGUGCCAUUUCAUAUAGAGCAAAUCCCAUGGUGGACGAGGACGUCUCGA
........(((((((......)))).((((.((((((..........((.......))..(((.(((((...((((..........).))))))))))))))))).))))..))).... ( -29.70)
>DroPer_CAF1 19323 119 + 1
GAAUUUCUGUUCAUGCUGCUCCAGGACUUCCUCCACCUCAGCCCUAACUUUGUCUUGUAUGUGCGGCUGCUUGGCCAGUUCAUACAGAGCAUAUCCCAUGGUGGAGGAGGAAGUCUCGA
((((....)))).........(..((((((((((.((...(((.......((..(((((((.((((((....)))).)).)))))))..))........))))).))))))))))..). ( -43.36)
>consensus
AAAGUUCUGGUCAUGUUGCUCCAUGACCUCCUCCACCUCAGCCCUAACCUUAUCUUGAAUGUGCGGAUUCUUUGCCAGUUCAUACAGAGCAAAUCCCAUGGUGGAGGAGGAAGUCUCAA
..........................(((((((((((..........((((((..(((((....((........)).))))).))))))..........)))))))))))......... (-25.20 = -25.87 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:15 2006