Locus 3014

Sequence ID 2R_DroMel_CAF1
Location 10,402,625 – 10,402,720
Length 95
Max. P 0.544046
window4972

overview

Window 2

Location 10,402,625 – 10,402,720
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.94
Mean single sequence MFE -27.30
Consensus MFE -16.94
Energy contribution -18.11
Covariance contribution 1.17
Combinations/Pair 1.25
Mean z-score -1.77
Structure conservation index 0.62
SVM decision value 0.02
SVM RNA-class probability 0.544046
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10402625 95 + 20766785
AACGCUUGGCGGCCAUUCGAUCCAGAUUGGGCACAAUGGUGUACAGUCGCAGAGUUUCUGCAAGGAUAUUAUUGA-AGUCAGUGGGAUUUAAUUAU
..((((.(((..(.((...((((.(((((..(((....)))..)))))((((.....))))..))))...)).).-.)))))))............ ( -29.60)
>DroSec_CAF1 15617 95 + 1
AACGCUUGGCGGCCAUUCGAUCCAGAUUGGGCACAAUGGUGUACAGUCGCAGAGUUUCUGUAAGGAUAUUAUGGA-AGUCAGUGGGAUUUAGUUAU
..((((.(((..((((...((((.(((((..(((....)))..)))))((((.....))))..))))...)))).-.)))))))............ ( -33.70)
>DroSim_CAF1 14968 96 + 1
AACGCUUGGCGGCCAUGCGAUCCAGAUUGGGCACAAUGGUGUACAGUCGCAGAGUUUCUGCAAGGAUAUUAUGGAAAGUCAGUGGGAUUUAGUUAU
..((((.(((..(((((..((((.(((((..(((....)))..)))))((((.....))))..))))..)))))...)))))))............ ( -35.70)
>DroEre_CAF1 13485 95 + 1
AACGCUUGGCGGCCAUUCGAUCCAGAUUGGGCACAAUGGUGUACAGUCGCAGGGUUUCUGCAGGGAUAUUUUCGA-AAUCAGUAGGAUUUCAUUAU
..((..(((...)))..))((((.(((((..(((....)))..)))))((((.....))))..))))......((-((((.....))))))..... ( -28.50)
>DroYak_CAF1 15050 95 + 1
AACGCUUGGCGGCCAUUCGAUCCAGAUGAGGCACAAUGGUGUAGAGUCUCAGAGUUUCUGCAAGGAUAUUUUCCA-AAUCAGUGAGAUAUAAAUAU
..((((..((((..((((.....((((...((((....))))...))))..))))..))))..(((.....))).-....))))............ ( -21.10)
>DroAna_CAF1 19058 93 + 1
AACGAUUUUUGGCCAUGCGAUCCAGUUGUGGAACAAUAGUGUAACGACGUAGAGUUUCUAUGAAA--AUUAAAAUACAUUAGUU-GACAUAGUCAU
.........((((.(((((((...(((((...((....))...)))))((((.....))))....--..............)))-).))).)))). ( -15.20)
>consensus
AACGCUUGGCGGCCAUUCGAUCCAGAUUGGGCACAAUGGUGUACAGUCGCAGAGUUUCUGCAAGGAUAUUAUCGA_AAUCAGUGGGAUUUAAUUAU
..((((.(((.........((((.(((((.((((....)))).)))))((((.....))))..))))..........)))))))............ (-16.94 = -18.11 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:14 2006